View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-7 (Length: 350)
Name: NF1509-Insertion-7
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-7 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 35791220 - 35791555
Alignment:
| Q |
16 |
tagtagtatattgcattgacaatgcataggatctcaagagtaaaataacataacgctttggtaggccgtgagcaaaa-actctttattcgttatcttgaa |
114 |
Q |
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| T |
35791220 |
tagtagtatattgcattgacaatgcataggatctcaagagtaaaataacataacgctttggtaggccgtgagcaaaaaactctttattcgttatcttgga |
35791319 |
T |
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| Q |
115 |
atacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacggggtcacataacatgtacccaatatgattagtta |
214 |
Q |
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| T |
35791320 |
atacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacggggtcacataacatgtacccaatatgattagtta |
35791419 |
T |
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| Q |
215 |
ttcgagttattattattttgtagaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtga |
314 |
Q |
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| T |
35791420 |
ttcgaattattattattttgtagaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtga |
35791519 |
T |
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| Q |
315 |
cctgctcctctaaatgttgcaaatgtaagcccttga |
350 |
Q |
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| T |
35791520 |
cctgctcctctaaatgttgcaaatgtaagcccttga |
35791555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 35782045 - 35782191
Alignment:
| Q |
96 |
ctttattcgttatcttgaaatacttgtcatattagacatgattagactattagctattgctatgtaatagcaaaattttcatacggggtcacataacatg |
195 |
Q |
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| T |
35782045 |
ctttattcgttatcttgtaatacttgccatatt-gacatgatcagactattagttattgctatgtaatagcaaaattttcatatggggtcacataacatg |
35782143 |
T |
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| Q |
196 |
tacccaatatgattagttattcgagttattattattttgtagaaggaggtg |
246 |
Q |
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| T |
35782144 |
tactcaatatgattagttattcga---attattattttgtagaaggaggtg |
35782191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 35782183 - 35782267
Alignment:
| Q |
261 |
aaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaaatgtaagcc |
345 |
Q |
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| T |
35782183 |
aaggaggtgaaaaacacaagtgagttgcttggtttgaaacatggaactgcatgacctgctcctctaaatgttgcaaacgtaagcc |
35782267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 35784976 - 35785071
Alignment:
| Q |
145 |
ttagctattgctatgtaatagcaaaattttcatacggggtcacataacatgtacccaatatgattagttattcgagttattattattttgtagaaggagg |
244 |
Q |
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| T |
35784976 |
ttagctattggtatgtaatagctaaattttcatatcgagtcacgtaacatgtatccaatataattaattattcga------attattttgtagaaggagg |
35785069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35780968 - 35781013
Alignment:
| Q |
19 |
tagtatattgcattgacaatgcataggatctcaagagtaaaataac |
64 |
Q |
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| T |
35780968 |
tagtatattgcattcacaatggataggatatgaagagtaaaataac |
35781013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 3335090 - 3334979
Alignment:
| Q |
237 |
gaaggaggtgtttctccatgtagaaaggaggtgaaaaacgcaagtgagttgcttggtttgaaacagggaactgcgtgacctgctcctctaaatgttgcaa |
336 |
Q |
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| T |
3335090 |
gaaggtggtgattctccaagaagaaaggtggtgaagaatttaagtgaattgcttggtttaaaacagggcactgcatgaccagctcctctaaatgtagcaa |
3334991 |
T |
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| Q |
337 |
atgtaagccctt |
348 |
Q |
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| T |
3334990 |
acgtaagtcctt |
3334979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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