View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509-Insertion-8 (Length: 316)

Name: NF1509-Insertion-8
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509-Insertion-8
NF1509-Insertion-8
[»] chr1 (1 HSPs)
chr1 (8-316)||(708249-708557)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 708249 - 708557
Alignment:
Q  8 caaatttcactatccataattcattcttagttaaaaaattcatactcttacatttttcactcaaaacccacttctcaaatttagttttttcaatggatga 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  708249 caaatttcactatccataattcattcatagttaaaaaattcatacttttacatttttcactcaaaacccacttctcaaatttagttttttcaatggatga 708348  T
Q  108 aactggtgatgacgagtctaggaggtgcagtagaacagggtcaggtggatggaggtgcaaagagcaagcttcacctgaaaaaacccaatgtgaaaggcat 207  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  708349 aactggtgatgacgagtctaggaggtgcagtagaaacgggtcaggtggatggaggtgcaaagagcaagctttacctggaaaaacccattgtgaaaggcat 708448  T
Q  208 catgagtattacaaaagcaggaattcgagtagttctgttgaaaagaatggtggaataagaaagggggttgttgttgatgatcatgataatggaggtaaag 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  708449 catgagtattacaaaagcaggaattcgagtagttttgttgaaaagaatggtggaataagaaatggggttgttgttgatgatcatgataatggaggtaaag 708548  T
Q  308 ggttgtttg 316  Q
    |||||||||    
T  708549 ggttgtttg 708557  T

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