View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509-Insertion-9 (Length: 380)
Name: NF1509-Insertion-9
Description: NF1509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 46357228 - 46357598
Alignment:
| Q |
8 |
gtagattctcctgcacaaagcagcaattgagatttgacatctcttggtcattggctattgcatccaaattggagctctgatccatgccaactaacagtac |
107 |
Q |
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| T |
46357228 |
gtagattctcctgcacaaagcagcaattgagatttgacatctcttggtcattggctattgcatccaaattggagctctgatccatgccaactaacagtac |
46357327 |
T |
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| Q |
108 |
tctacagagaannnnnnnaagaaggtaacgaaggaggtccctttccactgcatgcttatatgaagaagatatccgttgcaagagactgtgcaagaacaga |
207 |
Q |
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| T |
46357328 |
tctacagagaatttttttaagaaggtaacgaaggaggtccctttccactgcatgcttatatgaagaagatatccgttgcaagagactgtgcaagaacaga |
46357427 |
T |
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| Q |
208 |
taagaaatccataataaaacagaaaggaatcttctctattttaatcagtcattttgacctccctttaaaaccgtcttaacttccgaatcttctctatttc |
307 |
Q |
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| T |
46357428 |
taagaaatccataataaaacagaaaggaatcttctctattttaatcagtcattttgacctccctttaaaaccgtcttaacttccgaatcttctctatttc |
46357527 |
T |
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| Q |
308 |
aattacgctactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaacaaagtt |
378 |
Q |
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| T |
46357528 |
aattactctactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaacagagtt |
46357598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 46348191 - 46348251
Alignment:
| Q |
46 |
atctcttggtcattggctattgcatccaaattggagctctgatccatgccaactaacagta |
106 |
Q |
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| T |
46348191 |
atctgttggtcattggctattgcatccaaatttgagctctgatccatgccaactaacagta |
46348251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 46349274 - 46349333
Alignment:
| Q |
316 |
tactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaacaaa |
375 |
Q |
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| T |
46349274 |
tactattccagacctctcttccatgaagaaaagcctcagacagacttgacaagcaacaaa |
46349333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 46348578 - 46348671
Alignment:
| Q |
149 |
tttccactgcatgcttatatgaagaagatatccgttgc-----aagagactgtgcaagaacagataagaaatccataat-aaaacagaaaggaa |
236 |
Q |
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| T |
46348578 |
tttccactgcttgcttatatgaagaagatatcagtctcggggtaagagactgttcaagaacagataagaaatctataatgaaagcagaaaggaa |
46348671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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