View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15090_high_1 (Length: 361)
Name: NF15090_high_1
Description: NF15090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15090_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 51531925 - 51532271
Alignment:
| Q |
15 |
ggtacggtggatttcatttttggaaatggcacagttatgttccagaattgcgaaattctagccaagaaagggatgcaaggacaaaagaatactgtcgcag |
114 |
Q |
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| T |
51531925 |
ggtacggtggatttcatttttggaaatggcacagttatgttccagaattgcgaaattctagccaagaaagggatgcaaggacaaaagaatactgtcgcgg |
51532024 |
T |
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| Q |
115 |
cccatggacgaacagacccgaacataacaaccggtttctccttccaattctgcaacatttcagcagactttgaccttctaccttttattgcaaccatccg |
214 |
Q |
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| T |
51532025 |
cccatggacgaacagacccgaacgtaacaaccggtttctccttccaattctgcaacatttcagcagactttgaccttctaccttttattgcaaccatccg |
51532124 |
T |
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| Q |
215 |
aacataccttggtagaccttggaggccttattcgcgaacaattttcatgcaatcctatatgagtaacgcgataagtcccgaagggtggctagagtacaat |
314 |
Q |
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| T |
51532125 |
aacataccttggtagaccttggaggccttattcgcgaacaattttcatgcaatcctatatgagtaacgcgataagtcccgaagggtggctagagtacaat |
51532224 |
T |
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| Q |
315 |
ggaagtgttggtttggatacattgtactacagtgaatacaggaactc |
361 |
Q |
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| T |
51532225 |
ggaagtgttggtttggatacattgtactacagtgaatacatgaactc |
51532271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 51526178 - 51526524
Alignment:
| Q |
15 |
ggtacggtggatttcatttttggaaatggcacagttatgttccagaattgcgaaattctagccaagaaagggatgcaaggacaaaagaatactgtcgcag |
114 |
Q |
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| T |
51526178 |
ggtactgtggatttcatctttggagacgccacggctgtgttccaaaactgtcaaatactagccaagaaagggatgcctaaacaaaagaacactgttactg |
51526277 |
T |
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| Q |
115 |
cccatggacgaacagacccgaacataacaaccggtttctccttccaattctgcaacatttcagcagactttgaccttctaccttttattgcaaccatccg |
214 |
Q |
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| T |
51526278 |
ctcaaggacgaaaagacccgaaccaaccaactggtttctccttccaattttgcaacatttccgcagattctgaccttctaccatcggtcacaaccatccc |
51526377 |
T |
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| Q |
215 |
aacataccttggtagaccttggaggccttattcgcgaacaattttcatgcaatcctatatgagtaacgcgataagtcccgaagggtggctagagtacaat |
314 |
Q |
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| T |
51526378 |
aacataccttggtagaccctggaagacttattcgcgaacaatttttatgcaatcctacatgagtgacgcaataaggccagaagggtggttagagtggaac |
51526477 |
T |
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| Q |
315 |
ggaagtgttggtttggatacattgtactacagtgaatacaggaactc |
361 |
Q |
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| T |
51526478 |
ggtaattttgctttgaacacattgtactacgctgaatacatgaactc |
51526524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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