View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15090_high_2 (Length: 345)
Name: NF15090_high_2
Description: NF15090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15090_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 45244543 - 45244847
Alignment:
| Q |
22 |
ggtaaaggtgatgtcgtgcattgggttttaagcaagcaaaaagtggcatcttgcctattctatgagtggagttgaaatccgagggagtgccttttgaggt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45244543 |
ggtaaaggtgatgtcgtgcattgggttttaagcaagcaaaaagtggcatcttgcctattctatgagtggaattgaaatccgagggagtgccttttgaggt |
45244642 |
T |
|
| Q |
122 |
agtgtggttggggtgctcgacgaggggctgttttgaggcgtgttgtgccgctgttttgatctggttgcgcaggcctgtgctgctggctgcagttttggca |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45244643 |
agtgtagttggggtgctcgacgaggggctgttttgaggcgtgttgtgccgctgttttgatctggttgcgca-gcctgtgctgctggctgcagttttggca |
45244741 |
T |
|
| Q |
222 |
cctgcagaggctgttttggtctgttgttcggtgctgtttttatctgctatgtggttcggatttctggtgttttctgctgtatttccgtgttggttgtgga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45244742 |
cctgcagaggctgttttggtctgttgttcggtgctgtttttatctgctatgtggttcggacttctggtgttttctgctgtatttccgtgttggctgtgga |
45244841 |
T |
|
| Q |
322 |
gcgcct |
327 |
Q |
| |
|
|||||| |
|
|
| T |
45244842 |
gcgcct |
45244847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 18466738 - 18466894
Alignment:
| Q |
130 |
tggggtgctcgacgaggggctgttttgaggcgtgttgtgccgctgttttgatctggttgcgcaggcctgtgctgctggctgcagtttt-ggcacctgcag |
228 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
18466738 |
tggggtgctcgacgagaggctgttttgaggcgtgttgtgcgactgtttgca-----------aggcctgtgctgctggctgctttttttggcacctgcag |
18466826 |
T |
|
| Q |
229 |
aggctgttttggtctg-ttgttcggtgctgtttttatctgctatgtggttcggatttctggtgttttc |
295 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| |||||| | | |||||| |||||| ||||||| |
|
|
| T |
18466827 |
aggctgttttggcctgtttgttcggtgtcgtttttttctgctcttttgttcgggtttctgctgttttc |
18466894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 98 - 217
Target Start/End: Complemental strand, 28915237 - 28915118
Alignment:
| Q |
98 |
atccgagggagtgccttttgaggtagtgtggttggggtgctcgacgaggggctgttttgaggcgtgttgtgccgctgttttgatctggttgcgcaggcct |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| | ||| |||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
28915237 |
atccgagggagtgcctttggaggtagtgtggtcgaggtgctcgacgaggggctgttcttaggtttgttgtgctgctgttttgatttgtttgcgcatgcct |
28915138 |
T |
|
| Q |
198 |
gtgctgctggctgcagtttt |
217 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28915137 |
gtgctgctggctgcagtttt |
28915118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University