View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15091_low_1 (Length: 433)
Name: NF15091_low_1
Description: NF15091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15091_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 159 - 416
Target Start/End: Original strand, 6924676 - 6924934
Alignment:
| Q |
159 |
attttaataagatatgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
258 |
Q |
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| T |
6924676 |
attttaataagatgtgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
6924775 |
T |
|
| Q |
259 |
caatatttttcatgaagctagactctttttatatttttgttatagaagatatttcattcattcaaatagct-nnnnnnnccaacattacaaatgtgtaga |
357 |
Q |
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| T |
6924776 |
caatatttttcatgaagctagactctttttatatttttgttatagaagatatttcattcattcaaatagctaaaaaaaaacaacattacaaatgtgtaga |
6924875 |
T |
|
| Q |
358 |
tccctatccattttcggggtataccaattgtaggggtaaagtacagaatttgtaaattg |
416 |
Q |
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| T |
6924876 |
tccctatccattttcggggtataccaattataggggtaaagtacagaatttgtaaattg |
6924934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 6923310 - 6923462
Alignment:
| Q |
18 |
atgaatgtaaatataatta---ttattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
114 |
Q |
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| T |
6923310 |
atgaatgtaaatataattattattattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
6923409 |
T |
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| Q |
115 |
atctatatttgacatatttaatcaacattctattaaaaaatagaattttaata |
167 |
Q |
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| T |
6923410 |
atctatatttgacatatttaatcaacattctattataaaatagaattttaata |
6923462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 18988965 - 18988910
Alignment:
| Q |
34 |
ttattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
89 |
Q |
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|||||||||||||| ||||||||||||| |||| | |||||| |||||||||||| |
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| T |
18988965 |
ttattattatattatattttgtaatttgaattaatttataaatttgttaacatttt |
18988910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 817696 - 817745
Alignment:
| Q |
35 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaac |
84 |
Q |
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| T |
817696 |
tattattatattatattttgtactttgaattaaatcataaatttgttaac |
817745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 38303949 - 38303895
Alignment:
| Q |
35 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
89 |
Q |
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||||||||||||||||||||||||||| | |||| |||||| ||||||| |||| |
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| T |
38303949 |
tattattatattaaattttgtaatttggataaaattataaatttgttaacttttt |
38303895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 47044541 - 47044504
Alignment:
| Q |
39 |
attatattaaattttgtaatttgtgttaaatcataaat |
76 |
Q |
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| T |
47044541 |
attatagtagattttgtaatttgtgttaaatcataaat |
47044504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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