View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15091_low_4 (Length: 216)
Name: NF15091_low_4
Description: NF15091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15091_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 30816803 - 30816628
Alignment:
| Q |
17 |
taggaacagccaagtgttgattttaaatattaatgaacccttgtcatggcttctggctatggctgtcacaaatataatattgagagtattctttaaatta |
116 |
Q |
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| T |
30816803 |
taggaacagcaaagtgttgattttaaacattaatgaacccttgtcatggcttttggctatggctgtcacaaatataatattgagagtatccttttaatta |
30816704 |
T |
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| Q |
117 |
gttaaagtaataatagttttattgaacacaagcaacatatactaaattatgaaagcacagagacaaatttgtgaga |
192 |
Q |
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| T |
30816703 |
gttaaagtaataatagttttattgaacacaagcaacatatactaaattatgaaagcacataaacaaatttgtgaga |
30816628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 30821537 - 30821364
Alignment:
| Q |
20 |
gaacagccaagtgttgattttaaatattaatgaacccttgtcatggcttctggctatggctgtcacaaatataatattgagagtattctttaaattagtt |
119 |
Q |
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| T |
30821537 |
gaacagccaagtgttgattttacacattaatgaacccttgccgtggcttccggctatagctgacacaaatataatattgagagtatttttttaattagtt |
30821438 |
T |
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| Q |
120 |
aaagtaataatagttttattgaacacaagcaaca--tatactaaattatgaaagcacagagacaaatttgtgaga |
192 |
Q |
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| T |
30821437 |
aaagtaagaatagttttattgaacacaagcaacatatatactaaattttgaaagcaca-aaacaagtttgtgaga |
30821364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 39896526 - 39896439
Alignment:
| Q |
18 |
aggaacagccaagtgttgattttaaatattaatgaacccttgtcatggcttctggctatggctgtcacaaatataatattgagagtat |
105 |
Q |
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| T |
39896526 |
aggaacagtcaagtgttgattttcaacattaatgaacctttgccatggcttcctgctatgcctgttacaaatacaatattgggagtat |
39896439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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