View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15092_high_10 (Length: 249)
Name: NF15092_high_10
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15092_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 54897307 - 54897176
Alignment:
| Q |
102 |
aaatatgatatcaatttttgttgactcatacctctccaataacaaggattaaaagatccacaagtcctaattcaactatcattaatatcaagattgttaa |
201 |
Q |
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| T |
54897307 |
aaatatgatatcaatttttgttgactcgtacctctccaataacaaggattaaaagatccacaagtcctaattcaactatcattaatatcaagattgttaa |
54897208 |
T |
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| Q |
202 |
gcgagatatcacggtccaaacccgacatttcc |
233 |
Q |
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| T |
54897207 |
gcgagacatcacggtccaaacccaacatttcc |
54897176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 54897609 - 54897495
Alignment:
| Q |
1 |
aattgtacaagacccgtttttgtccgacaaagttgccttaatttctttttgaggggcctttaaaaatatttattaccaccaaaaa-----gaaatatgct |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54897609 |
aattgtacaagacccgtttttgtccgacaaagttgccttaatttctttttgaggggcctttaaaaatatttattaccaccaaaaagaaaagaaatatgct |
54897510 |
T |
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| Q |
96 |
tccactaaatatgat |
110 |
Q |
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||||||||||||||| |
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| T |
54897509 |
tccactaaatatgat |
54897495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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