View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15092_high_12 (Length: 239)

Name: NF15092_high_12
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15092_high_12
NF15092_high_12
[»] chr4 (3 HSPs)
chr4 (128-222)||(15692400-15692494)
chr4 (13-52)||(15692570-15692609)
chr4 (167-211)||(16571417-16571461)
[»] chr7 (5 HSPs)
chr7 (126-209)||(8323804-8323887)
chr7 (126-213)||(8327003-8327090)
chr7 (167-222)||(11773875-11773929)
chr7 (140-204)||(16094969-16095032)
chr7 (140-180)||(17161051-17161091)
[»] chr8 (1 HSPs)
chr8 (127-213)||(14393478-14393564)
[»] chr5 (4 HSPs)
chr5 (131-205)||(17169807-17169880)
chr5 (165-222)||(24194417-24194474)
chr5 (140-204)||(13457209-13457273)
chr5 (171-211)||(19316299-19316339)
[»] chr1 (4 HSPs)
chr1 (135-180)||(21720487-21720532)
chr1 (167-222)||(20408075-20408130)
chr1 (182-220)||(21719908-21719946)
chr1 (168-213)||(23475706-23475751)
[»] chr6 (4 HSPs)
chr6 (171-222)||(19977154-19977205)
chr6 (140-201)||(12463495-12463556)
chr6 (131-183)||(23224543-23224595)
chr6 (142-202)||(23299790-23299850)
[»] chr2 (1 HSPs)
chr2 (167-204)||(27353768-27353805)
[»] scaffold0190 (1 HSPs)
scaffold0190 (162-222)||(1929-1989)
[»] scaffold0186 (1 HSPs)
scaffold0186 (140-204)||(17813-17877)
[»] scaffold0093 (1 HSPs)
scaffold0093 (140-204)||(52058-52122)
[»] chr3 (2 HSPs)
chr3 (140-204)||(14861095-14861159)
chr3 (170-222)||(10934698-10934750)
[»] scaffold0205 (1 HSPs)
scaffold0205 (171-222)||(943-994)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 15692494 - 15692400
Alignment:
Q  128 tatgagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15692494 tatgagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 15692400  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 15692609 - 15692570
Alignment:
Q  13 ataatactatgaggaaaattaggttttcacaaaatatttt 52  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  15692609 ataacactatgaggaaaattaggttttcacaaaatatttt 15692570  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 16571461 - 16571417
Alignment:
Q  167 ctagaggtaaggggaatggtttcctttcatcaattaagtcataat 211  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||    
T  16571461 ctagaggcaagggggattgtttcttttcatcaattaagtcataat 16571417  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 8323804 - 8323887
Alignment:
Q  126 tctatgagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagtcata 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| | ||||||||||    
T  8323804 tctatgagctaaagtgaagcttaagctagaggaatcaagggctagaggtaagggggatggtttcttttcattatttaagtcata 8323887  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 8327003 - 8327090
Alignment:
Q  126 tctatgagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagtcataatct 213  Q
    |||| ||||||||||||||||||| || ||||||||||| ||||||  ||||||| || ||||| |||||| | ||||||||||||||    
T  8327003 tctaggagctaaagtgaagcttaatcttgaggaatcaagggctagacataagggggatcgtttcttttcattatttaagtcataatct 8327090  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 11773875 - 11773929
Alignment:
Q  167 ctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||    
T  11773875 ctagaggtaagagggatg-tttcctttcatcaattaagtcataatcttctattttc 11773929  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 16095032 - 16094969
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    ||||||||||||||| ||| |||||| |||||||||||||| || | ||||||||||||||||||    
T  16095032 tgaagcttaagctagtggattcaagacctagaggtaagggg-atagattcctttcatcaattaag 16094969  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 17161051 - 17161091
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaagggg 180  Q
    ||||||||||||||| ||| |||||| ||||||||||||||    
T  17161051 tgaagcttaagctagtggattcaagacctagaggtaagggg 17161091  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 14393478 - 14393564
Alignment:
Q  127 ctatgagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagtcataatct 213  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||    
T  14393478 ctatgagcaaaagtgaagcttaagctacaggaatcaagagctagaggtaaggggaatggttccttttcactaattaagtcataatct 14393564  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 17169880 - 17169807
Alignment:
Q  131 gagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaagt 205  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||| ||||||||||    
T  17169880 gagctaaagtgaagcttaagctagaagaatcaagggctagaggtaagggg-atggtttcttttcctcaattaagt 17169807  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 24194474 - 24194417
Alignment:
Q  165 agctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||| |||||||    
T  24194474 agctagaggtaaggaggatggtttcttttcatcaattaagtcataatcttatattttc 24194417  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 13457273 - 13457209
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    ||||||||||||||| ||| |||||| |||||||||||||| || | ||| ||||||||||||||    
T  13457273 tgaagcttaagctagcggattcaagacctagaggtaagggggatagattcttttcatcaattaag 13457209  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19316299 - 19316339
Alignment:
Q  171 aggtaaggggaatggtttcctttcatcaattaagtcataat 211  Q
    |||||||||| ||||| || |||||||||||||||||||||    
T  19316299 aggtaagggggatggtctcttttcatcaattaagtcataat 19316339  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 21720532 - 21720487
Alignment:
Q  135 taaagtgaagcttaagctagaggaatcaagagctagaggtaagggg 180  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21720532 taaagtgaagcttaagctagaggaatcaagagctataggtaagggg 21720487  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 20408130 - 20408075
Alignment:
Q  167 ctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||  |||||||    
T  20408130 ctagaggtaagggggatggtttctttttatcaattaagtcataatctcttattttc 20408075  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 21719946 - 21719908
Alignment:
Q  182 atggtttcctttcatcaattaagtcataatcttctattt 220  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  21719946 atggtttcttttcatcaattaagtcataatcttcaattt 21719908  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 23475706 - 23475751
Alignment:
Q  168 tagaggtaaggggaatggtttcctttcatcaattaagtcataatct 213  Q
    ||||||||||||| |||||||| |||| ||| ||||||||||||||    
T  23475706 tagaggtaagggggatggtttcttttcttcagttaagtcataatct 23475751  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 19977154 - 19977205
Alignment:
Q  171 aggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||||||||  |||||||||||||||||||||||| ||||||||||| ||||    
T  19977154 aggtaagggagatggtttcctttcatcaattaagtaataatcttctaatttc 19977205  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 12463495 - 12463556
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaatt 201  Q
    ||||||||||||||| ||| |||||| |||||||||||||| || | ||| |||||||||||    
T  12463495 tgaagcttaagctagtggattcaagacctagaggtaagggggatagattcatttcatcaatt 12463556  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 23224543 - 23224595
Alignment:
Q  131 gagctaaagtgaagcttaagctagaggaatcaagagctagaggtaaggggaat 183  Q
    |||||||||||| ||||||||| | ||| |||||| ||||||||||| |||||    
T  23224543 gagctaaagtgaggcttaagcttgtggattcaagacctagaggtaagaggaat 23224595  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 23299850 - 23299790
Alignment:
Q  142 aagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaatta 202  Q
    |||| |||||||| ||| |||||| ||| |||||||||| || | ||||||||||||||||    
T  23299850 aagcgtaagctagtggattcaagacctacaggtaagggggatagattcctttcatcaatta 23299790  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 27353805 - 27353768
Alignment:
Q  167 ctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    |||||||||||||| |||||||||||||||||||||||    
T  27353805 ctagaggtaagggggatggtttcctttcatcaattaag 27353768  T

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Target: scaffold0190 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 1989 - 1929
Alignment:
Q  162 aagagctagaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||| |||||||||||||| |||||||| |||||  ||||||||||||||||  |||||||    
T  1989 aagaactagaggtaagggggatggtttcttttcactaattaagtcataatctattattttc 1929  T

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Target: scaffold0186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 17877 - 17813
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    ||||||||||| ||| ||| |||||| |||||||||||||| || | ||| ||||||||||||||    
T  17877 tgaagcttaagttagtggattcaagacctagaggtaagggggatagattcatttcatcaattaag 17813  T

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Target: scaffold0093 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 52122 - 52058
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    ||||||||||||||| ||| |||||| |||||||||| ||| || | ||| ||||||||||||||    
T  52122 tgaagcttaagctagtggactcaagacctagaggtaaaggggatagattcatttcatcaattaag 52058  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 14861095 - 14861159
Alignment:
Q  140 tgaagcttaagctagaggaatcaagagctagaggtaaggggaatggtttcctttcatcaattaag 204  Q
    ||||||||||||||| ||| |||||| |||||| ||||||| || | ||||||| ||||||||||    
T  14861095 tgaagcttaagctagtggattcaagacctagagctaagggggatagattccttttatcaattaag 14861159  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 10934750 - 10934698
Alignment:
Q  170 gaggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||  |||||||    
T  10934750 gaggtaagggggatggtttcttttcactaattaagtcataatctattattttc 10934698  T

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Target: scaffold0205 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 943 - 994
Alignment:
Q  171 aggtaaggggaatggtttcctttcatcaattaagtcataatcttctattttc 222  Q
    |||||||||| |||||| | ||||||||||||| |||||||||||| |||||    
T  943 aggtaagggggatggttccttttcatcaattaattcataatcttctcttttc 994  T

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