View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15092_high_4 (Length: 435)
Name: NF15092_high_4
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15092_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 4544661 - 4544255
Alignment:
| Q |
16 |
atcattctcattcttgatcatccatgaaattgaaaactcacccatgaaacatattcagtaaataggaaatttggaatccctaatcaattgaattcctatt |
115 |
Q |
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| T |
4544661 |
atcattctcattcttgatcatccatgaaattgaaaactcacccatgaaacatattcagtaaataggaaatttggaatccctaatcaattgaattcctatt |
4544562 |
T |
|
| Q |
116 |
cagaatcttaattgtagttcctcgaaatataaatcgttcatcactgaatccctgattgctgttctcgttcatcactagatccctaattgtttgttcgcac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4544561 |
cagaatcttaattgtagttcctcgaaatataaatcgttcatcactgaatccctgattgctgttctcgttcatcactagatccctaattgtttgttcgcac |
4544462 |
T |
|
| Q |
216 |
aatcactctcacttctcgatctcaatcttaatctttcacatcataatcactcaatattcagcatcagatttcgcaaattatttcatttattcgctgcaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4544461 |
aatcactctcacttctcgatctcaatcttaatctttcacatcataatcactcaatattcagcatcagatttcgcaaattatttcgtttattcgccgcaat |
4544362 |
T |
|
| Q |
316 |
ctaaggtattgagtttctcaactttgtatgtttgtatgatacacatatttggtagcaactatttatatgatatgatataatatgtctcgtgattaacaaa |
415 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4544361 |
ctaaggtattgagtttctcaactttg--------tatgatacacatatttggtagcaactatttatatgatatgatataatatgtctcgtgattaacaaa |
4544270 |
T |
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| Q |
416 |
ctcaggtttgaattt |
430 |
Q |
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|||| |||||||||| |
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| T |
4544269 |
ctcaagtttgaattt |
4544255 |
T |
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