View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15092_low_13 (Length: 237)

Name: NF15092_low_13
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15092_low_13
NF15092_low_13
[»] chr4 (14 HSPs)
chr4 (1-223)||(5894549-5894771)
chr4 (42-223)||(5613734-5613912)
chr4 (66-223)||(5847557-5847711)
chr4 (3-105)||(5885658-5885760)
chr4 (121-215)||(5885824-5885918)
chr4 (3-104)||(3749711-3749812)
chr4 (3-107)||(5559765-5559869)
chr4 (1-107)||(5570462-5570568)
chr4 (137-216)||(5553844-5553923)
chr4 (137-214)||(5852499-5852576)
chr4 (154-210)||(3749593-3749649)
chr4 (11-107)||(5538615-5538711)
chr4 (22-97)||(5582693-5582768)
chr4 (52-107)||(5858820-5858875)
[»] chr8 (1 HSPs)
chr8 (1-104)||(1486008-1486111)
[»] scaffold0454 (1 HSPs)
scaffold0454 (22-104)||(1191-1273)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5894549 - 5894771
Alignment:
Q  1 aattggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatct 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5894549 aattggagaagttgacttatctgaatttgtcaaaggctagctttgtggggcagattccaattgagatttcacaacttacaaggttggttactcttgatct 5894648  T
Q  101 ctcttctgatgtcgttcgcacaaaacctataatcccaaatttacaaaagtttatccaaaatctcaccaatattaggcaactgtatctaaatggtataact 200  Q
    ||||| ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5894649 ctcttttgatgtcgttcgcacgaaacctaatatcccaaatttacaaaagtttatccaaaatctcaccaatattaggcaactgtatctagatggtataact 5894748  T
Q  201 ataacatctcagggacataaatg 223  Q
    |||||||||||| ||||||||||    
T  5894749 ataacatctcagagacataaatg 5894771  T

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Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 5613912 - 5613734
Alignment:
Q  42 tttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctctcttctgatgtcgttcgcacaaaacctataatcccaaatt 141  Q
    ||||||||| |||||||||| |||||||| || || || ||||||||||||||||||||||||||| ||||||    ||||||||||| |||||||||||    
T  5613912 tttgtggggcagattccaatagagatttcccagctcacgaggttggttactcttgatctctcttcttatgtcga---cacaaaacctaaaatcccaaatt 5613816  T
Q  142 tacaaaagtttatccaaaatctcaccaatattaggcaactgtatctaaatggtataactataacatctcagggacataaatg 223  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  5613815 tacaaaagcttatccaaaatctcaccaatatgaggcaactgtatctagatggtataagtataacatctcagggacatgaatg 5613734  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 5847557 - 5847711
Alignment:
Q  66 atttcacaacttacaaggttggttactcttgatctctcttctgatgtcgttcgcacaaaacctataatcccaaatttacaaaagtttatccaaaatctca 165  Q
    ||||||||||| || ||||||||||||||||||||||||||| ||||||    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  5847557 atttcacaactcacgaggttggttactcttgatctctcttcttatgtcga---cacaaaacctaaaatcccaaatctacaaaagtttatccaaaatctca 5847653  T
Q  166 ccaatattaggcaactgtatctaaatggtataactataacatctcagggacataaatg 223  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||| ||||||| ||||    
T  5847654 ccaatattaggcaaatgtatctagatggtataagtataacatctcggggacatgaatg 5847711  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 5885658 - 5885760
Alignment:
Q  3 ttggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctct 102  Q
    |||||||||||||||| ||||||||||||| | ||| | |||  |||||||||||||||||||||||| || |||||||||||||||||||||||| |||    
T  5885658 ttggagaagttgacttatctgaatttgtcagatgctggatttcagggggagattccaattgagatttcccatcttacaaggttggttactcttgatatct 5885757  T
Q  103 ctt 105  Q
    |||    
T  5885758 ctt 5885760  T

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Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 5885824 - 5885918
Alignment:
Q  121 caaaacctataatcccaaatttacaaaagtttatccaaaatctcaccaatattaggcaactgtatctaaatggtataactataacatctcaggga 215  Q
    |||||| || |||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  5885824 caaaacttaaaatctcaaatctacaaaagcttatccaaaatcttaccaatattaggcaactgtatctagatggtataagtataacatctccggga 5885918  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 3749812 - 3749711
Alignment:
Q  3 ttggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctct 102  Q
    ||||| |||||||| | ||||||||||||| | ||||||||||| ||| ||||||| ||||||||||| || |||||||||||||||| |||||||||||    
T  3749812 ttggataagttgacatatctgaatttgtcacaagctagctttgtagggcagattccgattgagatttcgcagcttacaaggttggttattcttgatctct 3749713  T
Q  103 ct 104  Q
    ||    
T  3749712 ct 3749711  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 5559869 - 5559765
Alignment:
Q  3 ttggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctct 102  Q
    |||||||||||||| | ||||||||||||| | ||||||||||||||| | |||||  | |||||||| || || | |||||||||||||||||||||||    
T  5559869 ttggagaagttgacatatctgaatttgtcatatgctagctttgtggggcaaattcctgtagagatttctcagctcaaaaggttggttactcttgatctct 5559770  T
Q  103 cttct 107  Q
    |||||    
T  5559769 cttct 5559765  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 5570462 - 5570568
Alignment:
Q  1 aattggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatct 100  Q
    |||||| || ||||| || ||||||||| ||| | |||| |||||||||| | ||| | || |||||||| || ||||||||||||||||||||||||||    
T  5570462 aattggtgatgttgaattatctgaatttatcatatgctaactttgtggggcatatttctatagagatttctcagcttacaaggttggttactcttgatct 5570561  T
Q  101 ctcttct 107  Q
    |||||||    
T  5570562 ctcttct 5570568  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 5553923 - 5553844
Alignment:
Q  137 aaatttacaaaagtttatccaaaatctcaccaatattaggcaactgtatctaaatggtataactataacatctcagggac 216  Q
    |||| ||||||||||| |||||||||| ||||| ||||||||||||||| || | ||||||||| |||||||| ||||||    
T  5553923 aaatctacaaaagtttgtccaaaatcttaccaagattaggcaactgtatttagaaggtataactctaacatctgagggac 5553844  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 5852499 - 5852576
Alignment:
Q  137 aaatttacaaaagtttatccaaaatctcaccaatattaggcaactgtatctaaatggtataactataacatctcaggg 214  Q
    |||| ||||||||||| |||||||||| ||||| |||||||||||||||||| | | ||||||| |||||||| ||||    
T  5852499 aaatctacaaaagtttgtccaaaatctgaccaagattaggcaactgtatctagaagatataactctaacatctgaggg 5852576  T

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Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 3749649 - 3749593
Alignment:
Q  154 tccaaaatctcaccaatattaggcaactgtatctaaatggtataactataacatctc 210  Q
    |||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  3749649 tccaaaatctcaccaatattaggcaactatatctagatgggataagtataacatctc 3749593  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 5538615 - 5538711
Alignment:
Q  11 gttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctctcttct 107  Q
    ||||| || ||||||||||||| | |||| |||||||||| |||||||  | |||||||| || |||||||||||||| ||||| ||| ||||||||    
T  5538615 gttgagttatctgaatttgtcatatgctaactttgtggggcagattcctttagagatttctcagcttacaaggttggtaactctagatatctcttct 5538711  T

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Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 5582693 - 5582768
Alignment:
Q  22 tgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttga 97  Q
    ||||||||||| | |||| |||||||||| | ||||| || |||||||| || |||||||||||||||||||||||    
T  5582693 tgaatttgtcatatgctaactttgtggggcaaattcctatagagatttctcagcttacaaggttggttactcttga 5582768  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 5858875 - 5858820
Alignment:
Q  52 agattccaattgagatttcacaacttacaaggttggttactcttgatctctcttct 107  Q
    |||||||||| || ||||| || |||| ||||||||||||||||||| ||||||||    
T  5858875 agattccaatagaaatttcccagcttataaggttggttactcttgatatctcttct 5858820  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1486111 - 1486008
Alignment:
Q  1 aattggagaagttgacttgtctgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatct 100  Q
    |||||| || ||||| || | ||||||||||| | ||||||||||| ||||||||||| || |||||||||||||||||||  ||||||||||||||| |    
T  1486111 aattggtgatgttgaattatttgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactcttgattt 1486012  T
Q  101 ctct 104  Q
    ||||    
T  1486011 ctct 1486008  T

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Target: scaffold0454 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 1273 - 1191
Alignment:
Q  22 tgaatttgtcaaaggctagctttgtgggggagattccaattgagatttcacaacttacaaggttggttactcttgatctctct 104  Q
    ||||||||||| | ||||||||||| ||||||||||| || |||||||||||||||||||  ||||||||||||||| |||||    
T  1273 tgaatttgtcacatgctagctttgtaggggagattcctatagagatttcacaacttacaaatttggttactcttgatttctct 1191  T

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