View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15092_low_2 (Length: 538)

Name: NF15092_low_2
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15092_low_2
NF15092_low_2
[»] chr4 (3 HSPs)
chr4 (13-522)||(165769-166278)
chr4 (120-248)||(105235-105363)
chr4 (257-522)||(105466-105741)
[»] chr8 (8 HSPs)
chr8 (126-236)||(5720992-5721102)
chr8 (126-236)||(5688260-5688370)
chr8 (120-233)||(5653926-5654039)
chr8 (126-234)||(5668475-5668582)
chr8 (446-519)||(5687700-5687773)
chr8 (351-402)||(5653772-5653823)
chr8 (448-519)||(5666630-5666701)
chr8 (446-519)||(5719816-5719889)
[»] chr3 (2 HSPs)
chr3 (120-234)||(12136454-12136568)
chr3 (330-403)||(12136278-12136351)
[»] chr7 (2 HSPs)
chr7 (120-232)||(13053749-13053861)
chr7 (432-522)||(13054128-13054218)
[»] scaffold0013 (4 HSPs)
scaffold0013 (120-243)||(91396-91519)
scaffold0013 (333-400)||(91202-91269)
scaffold0013 (434-522)||(91030-91119)
scaffold0013 (13-77)||(91575-91639)


Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 522
Target Start/End: Original strand, 165769 - 166278
Alignment:
Q  13 cagaaggattgaaggtaattaacaacataggctataaacaatgtaatttgatactaagctttcacaatcaagccgaattataagttaattaaggtaaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165769 cagaaggattgaaggtaattaacaacataggctataaacaatgtaatttgatactaagctttcacaatcaagccgaattataagttaattaaggtaaaat 165868  T
Q  113 tatgggttgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  165869 tatgggttgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcc 165968  T
Q  213 tgctgtcgcttcaggcaagtactattcaattaattgtcacaacttttgatcattgatgtttgatttatttgtgctacctggtttaattttgacacaactt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  165969 tgctgtcgcttcaggcaagtactattcaattaattgtcacaacttttgatcattgatgtttgatttatttgtgctacttggtttaattttgacacaactt 166068  T
Q  313 tattttttaattagtgtagagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtattaacatgtatt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  166069 tattttttaattagtgtagagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtattaatatgtatt 166168  T
Q  413 cattcatatatgaaaattaataaactaattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaat 512  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166169 cattcatatatgaaaattaataaactgattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaat 166268  T
Q  513 atgttgagtg 522  Q
    ||||||||||    
T  166269 atgttgagtg 166278  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 105235 - 105363
Alignment:
Q  120 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 219  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || ||||    
T  105235 tgtttcagtgttgtctacttttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcggtcaatgtcttgttgtc 105334  T
Q  220 gcttcaggcaagtactattcaattaattg 248  Q
    ||||||||||||| ||||| |||| ||||    
T  105335 gcttcaggcaagtgctattaaatttattg 105363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 257 - 522
Target Start/End: Original strand, 105466 - 105741
Alignment:
Q  257 tttgatcattgatgtttgatttatttgtgctacctggtttaattttgacacaactttattttttaattagtgtagagtaaaaatggtggattggcagctt 356  Q
    |||||||| | ||||||||||||||| ||||||||| | || |||| ||||||||  |||||| ||| | || |||||||||| ||||| |||||||| |    
T  105466 tttgatcacttatgtttgatttatttatgctacctgatctacttttaacacaactaaattttt-aatgattgcagagtaaaaagggtggtttggcagcat 105564  T
Q  357 gggagccagcaggagctccaaaatggttagaagtaagtattgtattaacatgtattcattcatatatgaa-----------aattaataaactaattagc 445  Q
    ||||||| |||||||||| | | |||||||||||||||||  |||||| ||||| ||||||||   ||||           | || |||||||||||| |    
T  105565 gggagcccgcaggagctcaagagtggttagaagtaagtatcatattaatatgtactcattcatgggtgaaatccattcatcagttgataaactaattacc 105664  T
Q  446 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtg 522  Q
    ||| |||||||||||||| ||||||||||||| || ||||||| ||||||||| ||||| |||||||||||||||||    
T  105665 tttattatttattttcagctactcaatcccactgagttttttgcggacattgttgttgagcatgaatatgttgagtg 105741  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 5721102 - 5720992
Alignment:
Q  126 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 225  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || | || |||||    
T  5721102 agtgttgtctgcttttatcaatgttgcctccagagattgtgggggaaaaaatggaacctgaaaggttatatgattcagtcaatatcttgttttctcttca 5721003  T
Q  226 ggcaagtacta 236  Q
    |||||||||||    
T  5721002 ggcaagtacta 5720992  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 5688370 - 5688260
Alignment:
Q  126 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 225  Q
    |||||||||| | ||||||||||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| || | || |||||    
T  5688370 agtgttgtctgcttttatcaatgttgtctccggagattgtaggggaaaaaatggaacctgaaaggttatatgattccgtcaatatcatgttttctcttca 5688271  T
Q  226 ggcaagtacta 236  Q
    |||||||||||    
T  5688270 ggcaagtacta 5688260  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 5654039 - 5653926
Alignment:
Q  120 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 219  Q
    |||| ||||||||||||| ||| ||||||||||||||| ||||||||||||||| | | ||||| |||||| ||||||||||||||||| |  || ||||    
T  5654039 tgtttcagtgttgtctacttttgtcaatgttgcctccaaagattgtgggggaaatggttgaacccgaaaggctatatgattcagtcaattttgtgttgtc 5653940  T
Q  220 gcttcaggcaagta 233  Q
     ||||||| |||||    
T  5653939 acttcaggaaagta 5653926  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 5668582 - 5668475
Alignment:
Q  126 agtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtcgcttca 225  Q
    |||||||||| | |||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||| | |||||||||||  | || |||||    
T  5668582 agtgttgtctgcttttatcgatgctgcctccggagattgtgggg-aaaagatggaacctgaaaggttatatgatgcggtcaatatcctattttctcttca 5668484  T
Q  226 ggcaagtac 234  Q
    |||||||||    
T  5668483 ggcaagtac 5668475  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 5687773 - 5687700
Alignment:
Q  446 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttga 519  Q
    ||||||||| |||||||| |||||||||| |  |||||| ||| ||| ||||||||||| | ||||||||||||    
T  5687773 tttgttattaattttcagctactcaatccaattgaatttcttgaggaaattgtagttgagcgtgaatatgttga 5687700  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 5653823 - 5653772
Alignment:
Q  351 cagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtatt 402  Q
    |||| |||||||||||||||| || | |||||||||||||||||||| ||||    
T  5653823 cagcgtgggagccagcaggaggtcaagaatggttagaagtaagtattatatt 5653772  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 519
Target Start/End: Complemental strand, 5666701 - 5666630
Alignment:
Q  448 tgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttga 519  Q
    ||||||| |||||||| |||||||||| | ||||||| | | ||| ||||||||||| | ||||||||||||    
T  5666701 tgttattaattttcagctactcaatccaatagaatttctcgaggaaattgtagttgagcgtgaatatgttga 5666630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 519
Target Start/End: Complemental strand, 5719889 - 5719816
Alignment:
Q  446 tttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttga 519  Q
    ||||||| | |||||||| |||||||||| | ||||||| ||| ||| | ||||||||| | ||||||||||||    
T  5719889 tttgttaataattttcagctactcaatccaatagaatttcttgaggaaaatgtagttgagcgtgaatatgttga 5719816  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 12136568 - 12136454
Alignment:
Q  120 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 219  Q
    |||| |||||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  12136568 tgtttcagtgttgcctacttttatcagtgttgcctccaaagattgtaggggaaaagatggaaccagaaaggttatatgattcagttaatatcctattgtc 12136469  T
Q  220 gcttcaggcaagtac 234  Q
     ||||||||||||||    
T  12136468 tcttcaggcaagtac 12136454  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 403
Target Start/End: Complemental strand, 12136351 - 12136278
Alignment:
Q  330 agagtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgtatta 403  Q
    ||||||||||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  12136351 agagtaaaaatggcggtttagcagcatgggagccagcaggagctccagaatggttagaagtaagtattatatta 12136278  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 13053749 - 13053861
Alignment:
Q  120 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 219  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | ||| ||||    
T  13053749 tgtttcagtgttgtctacttttatcaatgttgcctcctgagattgtgggtgaaaatatggaaccagagaggttatatgattcagtcaatcttctgttgtc 13053848  T
Q  220 gcttcaggcaagt 232  Q
     ||||||| ||||    
T  13053849 acttcaggtaagt 13053861  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 522
Target Start/End: Original strand, 13054128 - 13054218
Alignment:
Q  432 ataaactaattagctttgttatttattttcaggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtg 522  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||| |||||||| |  ||||||||| ||||| |||| |||||||||||    
T  13054128 ataaactaattacctttgttatttatttgcaggtactgaatcccactgaatttttcgcagacattgtaattgaatatgagtatgttgagtg 13054218  T

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Target: scaffold0013 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 91519 - 91396
Alignment:
Q  120 tgttccagtgttgtctacatttatcaatgttgcctccagagattgtgggggaaaagatggaaccagaaaggttatatgattcagtcaatatcctgctgtc 219  Q
    |||| ||||||||| |||  ||||||||||| |||||||  | ||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  91519 tgtttcagtgttgtttactattatcaatgtttcctccagcaactgtgggggaaaagatggaaccggaaaggttatatgattcagtcaatctcctgttgtc 91420  T
Q  220 gcttcaggcaagtactattcaatt 243  Q
     ||||||||| ||||| |||||||    
T  91419 acttcaggcatgtactgttcaatt 91396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 91269 - 91202
Alignment:
Q  333 gtaaaaatggtggattggcagcttgggagccagcaggagctccaaaatggttagaagtaagtattgta 400  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  91269 gtaaaaatggtggattggcagcttgggagccagcaggaggtcaagaatggttagaagtaagtattgta 91202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 434 - 522
Target Start/End: Complemental strand, 91119 - 91030
Alignment:
Q  434 aaactaattagctttgttatttattttc-aggtactcaatcccacagaattttttgtggacattgtagttgaacatgaatatgttgagtg 522  Q
    ||||||||||||||| || ||||||||| || |||| |||||||||||| |||| | |||||| ||| ||||||||||||||||||||||    
T  91119 aaactaattagctttcttgtttattttccagctactaaatcccacagaacttttcgaggacatggtaattgaacatgaatatgttgagtg 91030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 91639 - 91575
Alignment:
Q  13 cagaaggattgaaggtaattaacaacataggctataaacaatgtaatttgatactaagctttcac 77  Q
    ||||||| |||||||||| |||||||||||||||| || |   |||||||||| |||||||||||    
T  91639 cagaaggtttgaaggtaactaacaacataggctatgaatagcataatttgataataagctttcac 91575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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