View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15092_low_6 (Length: 296)
Name: NF15092_low_6
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15092_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 14518309 - 14518049
Alignment:
| Q |
20 |
agattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggatttttcgaaag |
119 |
Q |
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| T |
14518309 |
agatttcaaggaggagaatagaatcgaactctagacaagagttggtggcgcactgcaacaaaggaacaaaaactaagaccaaaatgggattcttcgaaag |
14518210 |
T |
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| Q |
120 |
aatggaaaaggtgagtagtgtatgcatctttatattcgcaaagtacattcaattagnnnnnnnggtgagaaatttgtattaatagtataaaatttttgga |
219 |
Q |
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| T |
14518209 |
aatggaaaagatg---agtgtatgtatctttatattcgcaaagtagtttcctttagtttttttgttgagaaatttgtattaatagtataagatttttgga |
14518113 |
T |
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| Q |
220 |
tgnnnnnnnngtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgtg |
286 |
Q |
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| T |
14518112 |
tgtctttt---tgtgtttgacatcatacattcctctccagggaaaacaacgcgcaagacgatctgtg |
14518049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 14531272 - 14531101
Alignment:
| Q |
115 |
gaaagaatggaaaaggtgagtagtgtatgcatctttatattcgcaaagtacattcaattagnnnnnnnggtgagaaatttgtattaatagtataaaattt |
214 |
Q |
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| T |
14531272 |
gaaagaatggaaaaggtgagtagtgtatgcatctttagattcgcaaagtacattcaattagtttttttgttgagaaatttgtattaatagtataaaattt |
14531173 |
T |
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| Q |
215 |
ttggatgnnnnnnnngtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgtg |
286 |
Q |
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| T |
14531172 |
ttggatgttttttttgtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgtg |
14531101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 14535821 - 14535700
Alignment:
| Q |
13 |
ttcttcgagattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggatttt |
112 |
Q |
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| T |
14535821 |
ttcttggagattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggatttt |
14535722 |
T |
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| Q |
113 |
tcgaaagaatggaaaaggtgag |
134 |
Q |
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| T |
14535721 |
ttgaaagaatggaaaaggtgag |
14535700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 14535697 - 14535608
Alignment:
| Q |
195 |
gtattaatagtataaaatttttggatgnnnnnnnngtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgtg |
286 |
Q |
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| T |
14535697 |
gtattaatagtataagatttttggatgtttttt--gtgtgtttgacatcatatattcctcttcagggaaaacaacgcgccaaacgatctgtg |
14535608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 37338106 - 37338382
Alignment:
| Q |
13 |
ttcttcgagattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaacaaaaactaagaccaaaatgggatttt |
112 |
Q |
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| T |
37338106 |
ttcttggagattacaaggaggagactagaatcacaatctggacaggaattggtggtgaactgccataaaggaacaaaaactaaaaccaaaatgggattct |
37338205 |
T |
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| Q |
113 |
tcgaaagaatggaaaaggtgagtagtgt-------atgcatctttatattcgcaaagtacattcaattagnnnnnnnggtgagaaatttgtattaatagt |
205 |
Q |
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| T |
37338206 |
tcgaaagaatgcaaaaggtgagtagtgtgtgtaaaatgtatctttatgttcccaaagtactttccgttattttgcatgttgaaaaatttgtagttatagt |
37338305 |
T |
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| Q |
206 |
ataaaatttttggatgnnnnnnnngtgtgtttgacatcatatattcctctccagggaaaacaacgcgccaaacgatctgt |
285 |
Q |
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| T |
37338306 |
ataagatttttggatgtatttc---tgtgtttgatatcttatattcttctccagggaaaacgacgcgccaaacgatctgt |
37338382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 37327456 - 37327529
Alignment:
| Q |
12 |
attcttcgagattacaaggaggagaatagaatcgaaatctggacaagaattggtggcagactgccacacaggaa |
85 |
Q |
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| T |
37327456 |
attcttagagattacaaggaggagaatagaatcacaatctggacaggaaatggtggtgtactgcaacacaggaa |
37327529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 37327556 - 37327620
Alignment:
| Q |
88 |
aaaactaagaccaaaatgggatttttcgaaagaatggaaaaggtgagtagtgtatgcatctttat |
152 |
Q |
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| T |
37327556 |
aaaactaagagcaaaatgggttattttgaacgaatgcaaaaggtgagtagtgtgtgtatctttat |
37327620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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