View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15092_low_7 (Length: 292)
Name: NF15092_low_7
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15092_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4024136 - 4023865
Alignment:
| Q |
1 |
cagattagacgtgtcccagtatcggatatatgtcgtatccgacatcgatacgacgccgatacttataattatattgaattatgtcannnnnnnnnnaaat |
100 |
Q |
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| T |
4024136 |
cagattagacatgtcctattatcggatatgtgtcgtatccgacatcgatacgacgccgatacttataattatattaaattatgtcattttttt---aaat |
4024040 |
T |
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| Q |
101 |
tattagttatgtcggtgtctatgtcgtgtctgtatccgtgtttcatgagttatatcgcacataagttgttcttcgagtaataaatcttatcgtatctcat |
200 |
Q |
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| T |
4024039 |
tattagttgtgtcggtgtctatgtcgtgtccgaatccgtgtt-catgagttatatcgcacataagttgttcttcgagtaataaatcttatcgtatctcat |
4023941 |
T |
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| Q |
201 |
ttgatctgataataaaatttattgattcaacgctgcaagcagatttgtggataacataacacctaactcatttgtg |
276 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
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| T |
4023940 |
ttgatctgataataaaatttattgattcaacgatggaagcaaatttgtggataacataacacctaactcatttgtg |
4023865 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 22652083 - 22652002
Alignment:
| Q |
3 |
gattagacgtgtcccagtatcggatatatgtcgtatccgacatcgatacgacgccgatacttataattatattgaattatgt |
84 |
Q |
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| T |
22652083 |
gattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgt |
22652002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 19312444 - 19312361
Alignment:
| Q |
1 |
cagattagacgtgtcccagtatcggatatatgtcgtatccgacatcgatacgacgccgatacttataattatattgaattatgt |
84 |
Q |
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| T |
19312444 |
cagattagacgtgtctcggtgtcggacacgtgtcgtatccgacaacgacacgacaccgatacttataattacactgaatcatgt |
19312361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 322535 - 322486
Alignment:
| Q |
97 |
aaattattagttatgtcggtgtctatgtcgtgtctgtatccgtgtttcat |
146 |
Q |
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| T |
322535 |
aaattattagtggtgtcggtgtctgtgtcgtgtctgtatccatgtttcat |
322486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9629856 - 9629931
Alignment:
| Q |
7 |
agacgtgtcccagtatcggatatatgtcgtatccgacatcgatacgacgccgatacttataattatattgaattat |
82 |
Q |
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| T |
9629856 |
agacgtgtcccggtgtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattat |
9629931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 40131725 - 40131647
Alignment:
| Q |
6 |
tagacgtgtcccagtatcggatatatgtcgtatccgacatcgatacgacgccgatacttataattatattgaattatgt |
84 |
Q |
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||||||||||||| | || || | | ||||| || |||||||||||||| |||||| ||||||||| | |||||||||| |
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| T |
40131725 |
tagacgtgtcccaatgtcagacacaagtcgtgtctgacatcgatacgacaccgatatttataattaaactgaattatgt |
40131647 |
T |
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