View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15092_low_8 (Length: 270)
Name: NF15092_low_8
Description: NF15092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15092_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 29465261 - 29465390
Alignment:
| Q |
17 |
agaagcctcctaccggatctaagaaggcgttgcaacgtgcttcagaagatatgcaagaggagatcaggcacaattttaacaaaatattcgatgaggcaag |
116 |
Q |
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| T |
29465261 |
agaagcctcctaccggatctaagaaggcgttgaaacgtgcttcagaagatatgcaagcggagatgaggcacaattttaacaaaatattcaatgaggcaag |
29465360 |
T |
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| Q |
117 |
tgcaagtacatctgcaataactactactac |
146 |
Q |
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| T |
29465361 |
tgcaagtacttctgcaataactactactac |
29465390 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 29465428 - 29465507
Alignment:
| Q |
190 |
tcagattaagattgattcatgtgtctcca---------attgggtacacactcactttgatcaaaatgatctaacctatg |
260 |
Q |
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| T |
29465428 |
tcagattaagattgattcatgtgtctccacaggcatgaattgggtacactctcactttgatcaaaatgatctaacctatg |
29465507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 14997344 - 14997432
Alignment:
| Q |
51 |
acgtgcttcagaagatatgcaagaggagatcaggcacaattttaacaaaatattcgatgaggcaagtgcaagtacatctgcaataacta |
139 |
Q |
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| T |
14997344 |
acgtgcttcagaagatatgcatgaggagattatgcgtaatttcaataaaatattgaacgaggcaagtgcaagtacttctgcaataacta |
14997432 |
T |
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