View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15093_high_2 (Length: 259)
Name: NF15093_high_2
Description: NF15093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15093_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 48153889 - 48154022
Alignment:
| Q |
107 |
aattggggacagaaacaataattcatataattacttcaaaataacaccaaggaaaacattcataatatgtatcaacaacattgcagcattaattatttag |
206 |
Q |
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| T |
48153889 |
aattggggacagaaacaataattcatataattacttcaaaataacaccaaggaaaacattcataatatgtatcaaaaacattgcagcatta---atttag |
48153985 |
T |
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| Q |
207 |
ttcaacacttcgactgagcaacatttgaagtctatta |
243 |
Q |
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| T |
48153986 |
ttcaacacttcgactgagcaacatttgaagtctatta |
48154022 |
T |
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Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 48153748 - 48153856
Alignment:
| Q |
1 |
cataatgtacagaatacttcgacataagcaggagtatttccacaacaagaattagggacatcagtccaaatttattaaagttaataggctagaccacagg |
100 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48153748 |
cataatgtacagaataatttgacataagcaggagtatttccacaacaagaattagggacatcagtccaaatttattaaagttaataggctagaccacagg |
48153847 |
T |
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| Q |
101 |
aagataaat |
109 |
Q |
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| T |
48153848 |
aagataaat |
48153856 |
T |
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