View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15093_low_1 (Length: 554)

Name: NF15093_low_1
Description: NF15093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15093_low_1
NF15093_low_1
[»] chr4 (40 HSPs)
chr4 (109-537)||(6672072-6672513)
chr4 (107-291)||(6590144-6590328)
chr4 (107-291)||(6813450-6813634)
chr4 (107-291)||(6794120-6794304)
chr4 (107-278)||(6750536-6750707)
chr4 (118-291)||(6648731-6648904)
chr4 (109-284)||(6500457-6500632)
chr4 (107-290)||(6624536-6624719)
chr4 (107-291)||(6535759-6535943)
chr4 (107-278)||(6725619-6725790)
chr4 (121-291)||(6548015-6548185)
chr4 (116-291)||(6833853-6834025)
chr4 (107-291)||(6713487-6713671)
chr4 (143-259)||(8412599-8412715)
chr4 (16-76)||(6677517-6677578)
chr4 (32-76)||(26699518-26699563)
chr4 (33-76)||(4588007-4588051)
chr4 (429-481)||(6624983-6625035)
chr4 (33-76)||(56178713-56178757)
chr4 (30-76)||(27417038-27417085)
chr4 (19-76)||(44570428-44570486)
chr4 (32-72)||(12119591-12119632)
chr4 (32-76)||(34788850-34788895)
chr4 (33-76)||(6656004-6656048)
chr4 (33-76)||(8665456-8665500)
chr4 (33-76)||(9927534-9927578)
chr4 (32-75)||(22882826-22882870)
chr4 (32-75)||(22934490-22934534)
chr4 (33-76)||(24969160-24969204)
chr4 (33-76)||(26364284-26364328)
chr4 (32-64)||(32091539-32091571)
chr4 (32-75)||(33989893-33989937)
chr4 (33-76)||(36463465-36463509)
chr4 (33-76)||(37740673-37740717)
chr4 (33-76)||(46147467-46147511)
chr4 (33-76)||(48893714-48893758)
chr4 (33-76)||(50262777-50262821)
chr4 (33-76)||(50673923-50673967)
chr4 (33-76)||(54199982-54200026)
chr4 (33-76)||(54883068-54883112)
[»] scaffold0373 (1 HSPs)
scaffold0373 (107-291)||(12000-12184)
[»] chr2 (10 HSPs)
chr2 (16-76)||(24398105-24398166)
chr2 (29-75)||(4561137-4561184)
chr2 (33-76)||(7815349-7815393)
chr2 (29-76)||(42019945-42019993)
chr2 (33-75)||(26353233-26353276)
chr2 (32-76)||(42261561-42261606)
chr2 (33-76)||(2334494-2334538)
chr2 (33-76)||(6595082-6595126)
chr2 (33-76)||(17490224-17490268)
chr2 (33-76)||(36773610-36773654)
[»] chr5 (13 HSPs)
chr5 (16-76)||(316810-316871)
chr5 (33-76)||(13239799-13239843)
chr5 (33-76)||(42310011-42310055)
chr5 (30-76)||(28278364-28278411)
chr5 (32-76)||(13695766-13695811)
chr5 (33-76)||(538073-538117)
chr5 (33-76)||(9049418-9049462)
chr5 (33-76)||(13488251-13488295)
chr5 (33-76)||(16452128-16452172)
chr5 (33-76)||(30683000-30683044)
chr5 (33-76)||(39468625-39468669)
chr5 (33-76)||(40147309-40147353)
chr5 (33-76)||(42428506-42428550)
[»] chr1 (18 HSPs)
chr1 (19-75)||(25652135-25652192)
chr1 (30-76)||(928049-928096)
chr1 (19-64)||(4535543-4535588)
chr1 (32-76)||(6808500-6808545)
chr1 (32-76)||(9109495-9109540)
chr1 (33-76)||(193659-193703)
chr1 (33-76)||(3156913-3156957)
chr1 (33-76)||(10925271-10925315)
chr1 (33-76)||(13547165-13547209)
chr1 (37-76)||(15820355-15820395)
chr1 (33-76)||(28220302-28220346)
chr1 (33-76)||(28223497-28223541)
chr1 (33-76)||(28265630-28265674)
chr1 (33-76)||(31659286-31659330)
chr1 (33-76)||(31925783-31925827)
chr1 (33-76)||(42298051-42298095)
chr1 (33-76)||(47255416-47255460)
chr1 (33-76)||(49918398-49918442)
[»] chr8 (13 HSPs)
chr8 (33-76)||(44353841-44353885)
chr8 (33-76)||(1292539-1292583)
chr8 (33-76)||(4162545-4162589)
chr8 (33-76)||(4283572-4283616)
chr8 (29-76)||(11137073-11137121)
chr8 (33-76)||(12702710-12702754)
chr8 (33-76)||(15212834-15212878)
chr8 (33-76)||(18655448-18655492)
chr8 (33-76)||(27811326-27811370)
chr8 (29-76)||(29796394-29796442)
chr8 (33-76)||(30143388-30143432)
chr8 (33-76)||(42435067-42435111)
chr8 (33-76)||(42498242-42498286)
[»] chr7 (17 HSPs)
chr7 (33-76)||(23555088-23555132)
chr7 (14-64)||(3904674-3904724)
chr7 (36-76)||(22328470-22328511)
chr7 (19-75)||(36574578-36574635)
chr7 (33-76)||(2361048-2361092)
chr7 (33-76)||(2390330-2390374)
chr7 (33-76)||(6360028-6360072)
chr7 (33-76)||(6432019-6432063)
chr7 (33-76)||(22270021-22270065)
chr7 (33-76)||(23565137-23565181)
chr7 (32-64)||(27073877-27073909)
chr7 (32-64)||(27204404-27204436)
chr7 (33-76)||(27347865-27347909)
chr7 (33-76)||(29608785-29608829)
chr7 (33-76)||(30024808-30024852)
chr7 (33-76)||(32358130-32358174)
chr7 (33-76)||(47674019-47674063)
[»] chr3 (9 HSPs)
chr3 (33-76)||(7762313-7762357)
chr3 (33-76)||(5236532-5236576)
chr3 (33-76)||(7764512-7764556)
chr3 (33-76)||(29810916-29810960)
chr3 (33-76)||(32891152-32891196)
chr3 (33-76)||(34491260-34491304)
chr3 (33-76)||(46173405-46173449)
chr3 (33-76)||(46860522-46860566)
chr3 (33-76)||(51398862-51398906)
[»] scaffold0176 (1 HSPs)
scaffold0176 (31-76)||(18077-18123)
[»] scaffold0219 (1 HSPs)
scaffold0219 (32-76)||(27518-27563)
[»] scaffold0002 (1 HSPs)
scaffold0002 (32-76)||(490396-490441)
[»] scaffold0466 (1 HSPs)
scaffold0466 (33-76)||(7375-7419)
[»] scaffold0066 (1 HSPs)
scaffold0066 (33-76)||(20491-20535)
[»] chr6 (6 HSPs)
chr6 (33-76)||(603164-603208)
chr6 (33-76)||(2973015-2973059)
chr6 (33-76)||(5043675-5043719)
chr6 (33-76)||(17758071-17758115)
chr6 (33-76)||(21588979-21589023)
chr6 (33-76)||(21593712-21593756)


Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 109 - 537
Target Start/End: Complemental strand, 6672513 - 6672072
Alignment:
Q  109 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672513 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 6672414  T
Q  209 ccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcacttctaaaagaaaaaatgca 308  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672413 ccaccggatgttcagtaacgaataactctgtcttatctaggaaacgggtgacacgttcaacaatattcttgatatcagcacttctaaaagaaaaaatgca 6672314  T
Q  309 ttgaaataggaatat-------------tctttaggtaagtagtaatattttgccatttattcgtagctattaagtaatccaagaatcaatttagagtaa 395  Q
    |||||||||||||||              |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6672313 ttgaaataggaatataagagaagcacaaactttaggtaagtagtaatatgttgccatttattcgtagctattaattaatccaagaatcaatttagagtaa 6672214  T
Q  396 tatatgagtcactagttagtctacaaactaacatgcatgttctgatataggtagttgtgaaataatagaggaataacattaagcctaaaaattttccacc 495  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672213 tatatgagtcactagttagtctacaaactcacatgcatgttctgatataggtagttgtgaaataatagaggaataacattaagcctaaaaattttccacc 6672114  T
Q  496 actatataaacaatccgaccagatgtgaacttacaccctctc 537  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6672113 actatataaacaatccgaccagatgtgaacttacaccctctc 6672072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 6590144 - 6590328
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| |||||||||||||||||||||||||| | || ||||||||| ||||| || |||||||| |||||||||||   ||||||||||| |||||||||    
T  6590144 ttttccccataccccccattccccatatccccaaaattaaaacatcatctgagttttggatgtttagtagcttagtcacagcttccacacgagattctac 6590243  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  6590244 acccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgatgtgttcaacaatattcttgatatcagcactt 6590328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 6813634 - 6813450
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| |||||   || |||||| | |||||||||    
T  6813634 ttttacccataccccccattccccatatccctagaagtaaaacatcttctgagttttcgatgtttagtagtttagtcacagtttccacgcgagattctac 6813535  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| |||| |||||    
T  6813534 acccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgacatgttcaacaatattcttgacatcatcactt 6813450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 6794304 - 6794120
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| || | |||||| || |||||||| | | ||||||||| ||||||||     
T  6794304 tttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgtttagcagcttagtcgcaacttccacacgagattctaa 6794205  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||||| |||||||||||||| ||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||    
T  6794204 acccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaacaatattcttgatatcagcactt 6794120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 6750707 - 6750536
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| ||| ||||||||||||||||||||||||| |  || ||||||||||| || ||||||||||| |||||||| | ||||||||||| |||||||||    
T  6750707 ttttacccgtaccccccattccccatatccctagcataaacacatcttctgatttttggatgttaaggagcttagtcgcagcttccacacgagattctac 6750608  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattctt 278  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  6750607 acccaccggatgttcagcaacaaataactctgtcctatctaacaaacggatgacatgttcaacaatattctt 6750536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 118 - 291
Target Start/End: Complemental strand, 6648904 - 6648731
Alignment:
Q  118 ccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggat 217  Q
    |||||||||||||| ||||| |||||| |||||||||||||||  |||||||| ||||||||||| | ||||||||||| || || ||||||||| ||||    
T  6648904 ccccccattccccagatcccaagaagtgaaacatcttctgaatattggatgtttagtagcttagttgcagcttccacacgaggttgtacacccactggat 6648805  T
Q  218 gttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||| ||||| |||||||||||||||||||| ||| |||||| | |||||||||||||||||||||| ||||||    
T  6648804 gttcggcaacaaataactctgtcctatctagcaaatgggtgatatgttcaacaatattcttgatatctgcactt 6648731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 109 - 284
Target Start/End: Original strand, 6500457 - 6500632
Alignment:
Q  109 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 208  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||| ||  || |  ||||| || |||||||| | ||||||||||| |||||||| ||    
T  6500457 ttgcccgtaccccccattccccatatccctagaattaagacatcttttgtgttttttatgtttagcagcttagtcgcagcttccacacgagattctaaac 6500556  T
Q  209 ccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatc 284  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  6500557 ccactggatgttcagcaacaaataactctgtcctatctagcaaacgggtgacgcgttgaacaatattcttgatatc 6500632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 6624536 - 6624719
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| |||| |||||||||||||||||| |||| ||||||||||||||| || || ||||| || |||||||||||   ||| ||||||| |||||||||    
T  6624536 ttttacccacaccccccattccccatattcctaaaagtaaaacatcttcggagttttggatattgagtagcttagtcacagcatccacacgagattctac 6624635  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcact 290  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||  ||| |||||||||||||||||| |||||    
T  6624636 acccactggatgttcagcaacgaataattctgtcctatctagcaaacgggtcacgtgtttaacaatattcttgatatctgcact 6624719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 6535759 - 6535943
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||  || |||||||| | ||||||||| | ||||| ||||| |||||| |     
T  6535759 ttttgcctataccccccattccccatatccctagaagtaagacatcttctgcgttttggatgtttaatagcttagttgcagcttgcacacgagattcaat 6535858  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
     ||||| |||||||||||||| ||||||||| |||||||||| ||||| || ||| ||||||||| ||||||||||||| |||||    
T  6535859 tcccactggatgttcagcaacaaataactctttcctatctagcaaacgagtaacatgttcaacaacattcttgatatcatcactt 6535943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 107 - 278
Target Start/End: Complemental strand, 6725790 - 6725619
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| ||| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||| | ||||||||| | ||||| ||||| |  ||||||    
T  6725790 ttttacccgtaccccccataccccaaatccctagaagtaaaacatcttctgatttttggatgttcaatagcttagttgcagcttgcacacgatgttctac 6725691  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattctt 278  Q
     || || |||||||||||||||||||||||||||||||| || ||||| ||||||  |||||||||||||||    
T  6725690 tcctactggatgttcagcaacgaataactctgtcctatccagcaaacgagtgacatattcaacaatattctt 6725619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 121 - 291
Target Start/End: Original strand, 6548015 - 6548185
Alignment:
Q  121 cccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggatgtt 220  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||| || | |||||| || | ||||| ||||| ||||||||| ||||| |||||||    
T  6548015 cccattccccatatccctaaaagtaaaacatcttctgacttttggatctttaatagcttggttgcagcttgcacacgagattctactcccactggatgtt 6548114  T
Q  221 cagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    | ||||| ||||||| |||||||||||| ||||| || ||| |   ||||||| | |||| ||||||||||    
T  6548115 cggcaacaaataactgtgtcctatctagcaaacgagtaacatgactaacaatactgttgacatcagcactt 6548185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 6834025 - 6833853
Alignment:
Q  116 taccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccgg 215  Q
    |||||||||||||||||||||| |||||||||||||||   || || |  ||||| | ||||||| |   ||  ||||||| |||||||| |||||| ||    
T  6834025 taccccccattccccatatcccaagaagtaaaacatct---gatttttttatgtttaatagcttaatcacagtgtccacacgagattctaaacccactgg 6833929  T
Q  216 atgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||||||||||| ||||||| ||||||||| || ||| | ||||||||||||||||| || |||||||||||||||    
T  6833928 atgttcagcaacaaataactttgtcctatcaagcaaatgtgtgacacgttcaacaatgtttttgatatcagcactt 6833853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 6713671 - 6713487
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||||||||  |||||||||||||| ||||||| |||||||||||| | |||||| ||||| || ||||  |||||   | ||||||| | ||||   ||    
T  6713671 ttttgcccaagccccccattccccagatccctaaaagtaaaacatcatttgaattttggatatttagtaaattagtcacatcttccactcgagatctgac 6713572  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    ||| || |||| |||| |||| ||||| |||||| ||||||| |||||||||||| ||||||| |||||||||||||| ||||||    
T  6713571 accgactggatattcaacaacaaataagtctgtcttatctagcaaacgggtgacatgttcaactatattcttgatatctgcactt 6713487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 8412715 - 8412599
Alignment:
Q  143 gtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggatgttcagcaacgaataactctgtcct 242  Q
    ||||||||||||||||||| || ||||| ||||||| |||   || ||  |||| |||||||||||| || |||||||||||||| ||||||||||| ||    
T  8412715 gtaaaacatcttctgaattttgcatgtttagtagctcagtcacagattttacacgagattctacaccgactggatgttcagcaacaaataactctgtgct 8412616  T
Q  243 atctaggaaacgggtga 259  Q
    |||||| ||||||||||    
T  8412615 atctagcaaacgggtga 8412599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 6677578 - 6677517
Alignment:
Q  16 cattatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  6677578 cattatcaaagacttctttacaaagatatacaaaagggttacaagaaattagcttcaacaag 6677517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 26699518 - 26699563
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||    
T  26699518 tttacaaagagatacaaaagagttacaagaaattagcttcaacaag 26699563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 4588051 - 4588007
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  4588051 ttacaaagagatacaaaagggttacaagaaattagcttcaacaag 4588007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 481
Target Start/End: Original strand, 6624983 - 6625035
Alignment:
Q  429 tgcatgttctgatataggtagttgtgaaataatagaggaataacattaagcct 481  Q
    ||||||||||||||||  |||||||||| ||| |||||||||| |||||||||    
T  6624983 tgcatgttctgatataactagttgtgaagtaaaagaggaataatattaagcct 6625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 56178713 - 56178757
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  56178713 ttacaaagagatacaaaagggttacaagaaattagcttcaacaag 56178757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 27417038 - 27417085
Alignment:
Q  30 tttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||    
T  27417038 tttttacaaagagatacaaatgggttacaagaaattagcttcaacaag 27417085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 44570428 - 44570486
Alignment:
Q  19 tatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||| || || ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  44570428 tatcaatgagttctttacaaagagatacaaaaatgttacaagaaattagtttcaacaag 44570486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 12119632 - 12119591
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaa 72  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  12119632 tttacaaagagatacaaaagggttacaagaaattagcttcaa 12119591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 34788850 - 34788895
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||    
T  34788850 tttacaaagagatacaaaagagttacaagaaattaacttcaacaag 34788895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 6656048 - 6656004
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  6656048 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 6656004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 8665500 - 8665456
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  8665500 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 8665456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 9927534 - 9927578
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  9927534 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 9927578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22882826 - 22882870
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  22882826 tttacgaagagatacaaaagggttacaagaaattagcttcaacaa 22882870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 22934490 - 22934534
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  22934490 tttacgaagagatacaaaagggttacaagaaattagcttcaacaa 22934534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 24969204 - 24969160
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  24969204 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 24969160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 26364328 - 26364284
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  26364328 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 26364284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 32091571 - 32091539
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaat 64  Q
    |||||||||||||||||||| ||||||||||||    
T  32091571 tttacaaagagatacaaaagagttacaagaaat 32091539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 33989937 - 33989893
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||    
T  33989937 tttacaaagagatacaaaaggattacaagaaattagcttcaacaa 33989893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 36463465 - 36463509
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  36463465 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 36463509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 37740717 - 37740673
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  37740717 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 37740673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 46147467 - 46147511
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  46147467 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 46147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 48893714 - 48893758
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  48893714 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 48893758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 50262777 - 50262821
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  50262777 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 50262821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 50673923 - 50673967
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  50673923 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 50673967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 54199982 - 54200026
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  54199982 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 54200026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 54883112 - 54883068
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  54883112 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 54883068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 107 - 291
Target Start/End: Original strand, 12000 - 12184
Alignment:
Q  107 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 206  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| || | |||||| || |||||||| | | ||||||||| ||||||||     
T  12000 tttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgtttagcagcttagtcgcaacttccacacgagattctaa 12099  T
Q  207 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 291  Q
    |||||| |||||||||||||| ||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||    
T  12100 acccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaacaatattcttgatatcagcactt 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 24398166 - 24398105
Alignment:
Q  16 cattatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||| || || |||||||||||||||||||| ||||||||||| |||||||||||||    
T  24398166 cattatcaatgagttctttacaaagagatacaaaagggttacaagaaattagcttcaacaag 24398105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 4561184 - 4561137
Alignment:
Q  29 ttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  4561184 ttttttacaaagagatacaaaaatgttacaagaaattagcttcaacaa 4561137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 7815349 - 7815393
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  7815349 ttacaaagagatacaaaagagttacaagaaattagcttcaacaag 7815393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42019945 - 42019993
Alignment:
Q  29 ttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  42019945 ttttttacaaagagatacaaaagagttacaagaaattagcttctacaag 42019993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 26353276 - 26353233
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  26353276 ttacaaaaagatacaaaagtgttacaagaaattagcttcaacaa 26353233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 42261561 - 42261606
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  42261561 tttacaaagatatacaaaagagttacaagaaattagcttcaacaag 42261606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2334494 - 2334538
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||    
T  2334494 ttacaaagagatacaaaagagttactagaaattagcttcaacaag 2334538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 6595082 - 6595126
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||    
T  6595082 ttacaaagagattcaaaagggttacaagaaattagcttcaacaag 6595126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 17490224 - 17490268
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||    
T  17490224 ttacaaagagttacaaaagagttacaagaaattagcttcaacaag 17490268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 36773654 - 36773610
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  36773654 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 36773610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 316871 - 316810
Alignment:
Q  16 cattatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||| || || ||||||||||||||||||||  |||||||||| |||||||||||||    
T  316871 cattatcaatgagttctttacaaagagatacaaaaggattacaagaaattagcttcaacaag 316810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 13239843 - 13239799
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  13239843 ttacaaagagatacaaaagagttacaagaaattagcttcaacaag 13239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42310011 - 42310055
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  42310011 ttacaaagagatacaaaagagttacaagaaattagcttcaacaag 42310055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 28278411 - 28278364
Alignment:
Q  30 tttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||    
T  28278411 tttttacaaagagatacaaatgggttacaagaaattagcttcaacaag 28278364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 13695766 - 13695811
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||    
T  13695766 tttacaaagagatacaaaagggttacaagaaattagctttaacaag 13695811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 538117 - 538073
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  538117 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 538073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 9049418 - 9049462
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  9049418 ttacaaagagatacaaaatggttacaagaaattagcttcaacaag 9049462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 13488295 - 13488251
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  13488295 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 13488251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 16452172 - 16452128
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  16452172 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 16452128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 30683000 - 30683044
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||    
T  30683000 ttacaaagaaatacaaaagggttacaagaaattagcttcaacaag 30683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 39468625 - 39468669
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  39468625 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 39468669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 40147353 - 40147309
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  40147353 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 40147309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42428506 - 42428550
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  42428506 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 42428550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 25652192 - 25652135
Alignment:
Q  19 tatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    ||||||||| || ||||||||||||||||| || ||||||||||| ||||||||||||    
T  25652192 tatcaaagagttctttacaaagagatacaagagagttacaagaaattagcttcaacaa 25652135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 928049 - 928096
Alignment:
Q  30 tttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  928049 tttttacaaagagatccaaaagggttacaagaaattagcttcaacaag 928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 4535543 - 4535588
Alignment:
Q  19 tatcaaagacttttttacaaagagatacaaaagtgttacaagaaat 64  Q
    |||||| || || ||||||||||||||||||| |||||||||||||    
T  4535543 tatcaatgagttctttacaaagagatacaaaaatgttacaagaaat 4535588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 6808545 - 6808500
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaa-atagcttcaacaag 76  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||    
T  6808545 tttacaaagagatacaaaagagttacaagaagttagcttcaacaag 6808500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 9109495 - 9109540
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||    
T  9109495 tttacaaagagatacaaaagggttacaagaaattaacttcaacaag 9109540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 193703 - 193659
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  193703 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 3156957 - 3156913
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  3156957 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 3156913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 10925315 - 10925271
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  10925315 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 10925271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 13547165 - 13547209
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaag-aaatagcttcaacaag 76  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||    
T  13547165 ttacaaagagatacaaatgggttacaagaaaatagcttcaacaag 13547209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 15820395 - 15820355
Alignment:
Q  37 aaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  15820395 aaagagatacaaatgtgttacaagaaattagcttcaacaag 15820355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 28220302 - 28220346
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  28220302 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 28220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 28223497 - 28223541
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  28223497 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 28223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 28265630 - 28265674
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  28265630 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 28265674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 31659330 - 31659286
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  31659330 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 31659286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 31925783 - 31925827
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  31925783 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 31925827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42298051 - 42298095
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  42298051 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 42298095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 47255416 - 47255460
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  47255416 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 47255460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 49918442 - 49918398
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  49918442 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 49918398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 44353885 - 44353841
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  44353885 ttacaaagagatacaaatgtgttacaagaaattagcttcaacaag 44353841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 1292539 - 1292583
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  1292539 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 1292583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 4162589 - 4162545
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  4162589 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 4162545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 4283616 - 4283572
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  4283616 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 4283572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 11137121 - 11137073
Alignment:
Q  29 ttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||||||  |||| |||||| |||||||||||||    
T  11137121 ttttttacaaagagatacaaaacggttataagaaattagcttcaacaag 11137073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 12702710 - 12702754
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||||    
T  12702710 ttacaaagagacacaaaagggttacaagaaattagcttcaacaag 12702754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 15212878 - 15212834
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  15212878 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 15212834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 18655492 - 18655448
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  18655492 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 18655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 27811370 - 27811326
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  27811370 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 27811326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 29796394 - 29796442
Alignment:
Q  29 ttttttacaaagagatacaaaagtgttacaagaaat-agcttcaacaag 76  Q
    ||||||||||| || ||||||| ||||||||||||| ||||||||||||    
T  29796394 ttttttacaaataggtacaaaaatgttacaagaaatcagcttcaacaag 29796442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 30143432 - 30143388
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  30143432 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 30143388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 42435067 - 42435111
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  42435067 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 42435111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 42498286 - 42498242
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||    
T  42498286 ttacaaagaaatacaaaagggttacaagaaattagcttcaacaag 42498242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 23555132 - 23555088
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  23555132 ttacaaagaggtacaaaagtgttacaagaaattagcttcaacaag 23555088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 3904674 - 3904724
Alignment:
Q  14 atcattatcaaagacttttttacaaagagatacaaaagtgttacaagaaat 64  Q
    |||| |||||| || || ||||||||||||| |||||||||||||||||||    
T  3904674 atcactatcaatgagttctttacaaagagatgcaaaagtgttacaagaaat 3904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 22328470 - 22328511
Alignment:
Q  36 caaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  22328470 caaagagatacaaaagagttacaagaaattagcttcaacaag 22328511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 36574578 - 36574635
Alignment:
Q  19 tatcaaagacttttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaa 75  Q
    |||||| || || |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  36574578 tatcaatgagttctttacaaagagatataaaagggttacaagaaattagcttcaacaa 36574635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2361048 - 2361092
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  2361048 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 2361092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 2390374 - 2390330
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  2390374 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 2390330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 6360028 - 6360072
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  6360028 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 6360072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 6432063 - 6432019
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  6432063 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 6432019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 22270065 - 22270021
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  22270065 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 22270021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 23565137 - 23565181
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||    
T  23565137 ttacaaagagatacaaaagagttacaagaaattagtttcaacaag 23565181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 27073909 - 27073877
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaat 64  Q
    |||||||||||||||||||| ||||||||||||    
T  27073909 tttacaaagagatacaaaagagttacaagaaat 27073877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 27204404 - 27204436
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaat 64  Q
    |||||||||||||||||||| ||||||||||||    
T  27204404 tttacaaagagatacaaaagagttacaagaaat 27204436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 27347909 - 27347865
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  27347909 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 27347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 29608829 - 29608785
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  29608829 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 29608785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 30024808 - 30024852
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  30024808 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 30024852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 32358130 - 32358174
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  32358130 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 32358174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 47674019 - 47674063
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  47674019 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 47674063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 7762357 - 7762313
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||    
T  7762357 ttacaaagagatacaaaagagttacaagaaattagcttcaacaag 7762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 5236532 - 5236576
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  5236532 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 5236576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 7764556 - 7764512
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||    
T  7764556 ttacaaagagatacaaaagagttacaagaaattagctttaacaag 7764512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 29810960 - 29810916
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  29810960 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 29810916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 32891196 - 32891152
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  32891196 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 32891152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 34491304 - 34491260
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  34491304 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 34491260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 46173449 - 46173405
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  46173449 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 46173405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 46860566 - 46860522
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  46860566 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 46860522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 51398906 - 51398862
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  51398906 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 51398862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 18077 - 18123
Alignment:
Q  31 ttttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||    
T  18077 ttttacaaagagatacaaatgagttacaagaaattagcttcaacaag 18123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 27518 - 27563
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||    
T  27518 tttacaaagagatacaaatgagttacaagaaattagcttcaacaag 27563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 490396 - 490441
Alignment:
Q  32 tttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  490396 tttacaaagatatacaaaagagttacaagaaattagcttcaacaag 490441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 7419 - 7375
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  7419 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 7375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 20491 - 20535
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  20491 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 20535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 603164 - 603208
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  603164 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 603208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 2973015 - 2973059
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  2973015 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 2973059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 5043719 - 5043675
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  5043719 ttacaaagagatacaaatgagttacaagaaattagcttcaacaag 5043675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 17758115 - 17758071
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  17758115 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 17758071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 21589023 - 21588979
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  21589023 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 21588979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 21593756 - 21593712
Alignment:
Q  33 ttacaaagagatacaaaagtgttacaagaaa-tagcttcaacaag 76  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||    
T  21593756 ttacaaagagatacaaatgggttacaagaaattagcttcaacaag 21593712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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