View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15093_low_2 (Length: 465)
Name: NF15093_low_2
Description: NF15093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15093_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 5829413 - 5829849
Alignment:
| Q |
17 |
ctctgtgaggatagtcccttgcaattgaatgtcaccgcatgtggtcaaactccgtgaaagaagattgaataatggagaggatctcaatcatattggcatg |
116 |
Q |
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| T |
5829413 |
ctctgtgaggatagtcctttgcaattgaatgtcaccgcatgtggtcaaactccgtgaaagaagattgaataatggagaggatctcaatcatgttggcatg |
5829512 |
T |
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| Q |
117 |
taataatcaagattgaaatagtttgtgcttggtattgtttcatttttatgttatgtaatatgtttacaatttcaaatttcagatttgtttaagttcttgg |
216 |
Q |
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| T |
5829513 |
taataatcaagattgaaatagtttgtgcttggtattgtttcatttttatgttatgtaatatgtttacaatttca-------gatttgtttaagttcttgg |
5829605 |
T |
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| Q |
217 |
taactcgtttgatatctatcgtaaattttgtatcaataaattatgtacttgcttaaaacaatgatgtatcataaat---gatcatatttgattccccttt |
313 |
Q |
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| T |
5829606 |
taactcatttgatatctatcgtaaattttgtatcaataaattatgtacttgcttaaaacaatgatgtatcataaattaagatcatatttgattccccttt |
5829705 |
T |
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| Q |
314 |
gtcttaatgctgaaggaaccgttaatagacttgtcggtggtactttctggttctggagcatgattgtgctcaatcctctaatcacctgaattgtga-tta |
412 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5829706 |
gtcttaatgctgaaggaaccgttaatagacttctcggtggtactttctggttctggagcatgattgtgctcaatcctctaatcacctgaattgtgattta |
5829805 |
T |
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| Q |
413 |
gaagaatgagttgtttcctcctccttgcgcacaagatcctcttc |
456 |
Q |
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| T |
5829806 |
gaagaatgagttgtttcatcctccttgcgcacaagatcctcttc |
5829849 |
T |
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