View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15094_low_1 (Length: 838)
Name: NF15094_low_1
Description: NF15094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15094_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 718; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 5 - 822
Target Start/End: Original strand, 42079453 - 42080270
Alignment:
| Q |
5 |
tgaatagttctgaagaaagatgctttatagcctgaacatgacagcagaataggatgaagttatattctccagaagatgggccaagcctgcatggcctacc |
104 |
Q |
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| T |
42079453 |
tgaatagttctgaagaaagatgctttatagcctgaatatgacagcagaataggataaagttatattctccagaagatgggccaagcctgcatggcctacc |
42079552 |
T |
|
| Q |
105 |
tttgcaaaagtagatggaactgtaaccatgcgcaatcttaatatgataactatagattttggtagttggaatgctcctttcagatgattgtgaggaaaat |
204 |
Q |
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| T |
42079553 |
tttgcaaaagtagatggaactgtaaccatgcgcatgcttaatgtgataactatagattttggtagctggaatgctcctttcagatgattgtgaggaaaat |
42079652 |
T |
|
| Q |
205 |
aaattctacaaaatggagagaacggttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgaggggttagtttta |
304 |
Q |
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| T |
42079653 |
aaattctacaaaatggagagaacagttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgagtggttagtttta |
42079752 |
T |
|
| Q |
305 |
catcggatagaaataggcaaaatgaagcaaccagtgtattcaacgacttaaaccaccacgaaggtctagcgcacggtatgtgtacctatgttgtaaactt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
42079753 |
catcggatagaaataggcaaaatgaagcaaccagtgtattcaacgccttaaaccaccacgaaggtctagcgcacaatatatgtatgtatgttgtaaactt |
42079852 |
T |
|
| Q |
405 |
cgaggtaccaaattcgatttccactgataaaaatgctttgaaccatctgtgcaagatatactactacatagtacacctattggcttcgaacatatttagt |
504 |
Q |
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| T |
42079853 |
cgaggtaccaaattcgatttccaccgataaaattgctttgaaccacctgtgcaagatatactactacatagtacacctactggcttcgaacatatttagt |
42079952 |
T |
|
| Q |
505 |
tgcttcaaactaattgacagtcaaaagatttccatgagaattttagtactactgcagtttagtgatattcatacccagaagaattctagcgcaagtgatt |
604 |
Q |
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| T |
42079953 |
tgcttcaaactaattggcagtcaaaagacttccatgagaattttagtactaccgcagtttagtgatattcatacccagaagaattctagcgcaagtgatt |
42080052 |
T |
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| Q |
605 |
gtgatccattcttctgcataaagttggcactccagttgttctatctgatgcattgtctgccaatctcagtcagcctctaggtgtgtggcaatttttgctt |
704 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42080053 |
gtgatctattcttctgcataaagttagcactccagttgttctatctgatgcattgtctgccaatctcagtcagcctctaggtttgtggcaatttttgctt |
42080152 |
T |
|
| Q |
705 |
tcagccccacttctatcaagtcttaaaatgtcttgagaaattctagttcattttataaacatcaatcattgaacaaattaattccaatattattttatat |
804 |
Q |
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| T |
42080153 |
tcagccccacttctatcaagtcttaaaatgtcttgagaaattctagttcattttataaacgtcaatcattgaacaaattaattccaatattattttatat |
42080252 |
T |
|
| Q |
805 |
tttgttttcagtactttg |
822 |
Q |
| |
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|||||||||||||||||| |
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| T |
42080253 |
tttgttttcagtactttg |
42080270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 42082086 - 42082307
Alignment:
| Q |
33 |
agcctgaacatgacagcagaataggatgaagttatattctccagaagatgggccaagcctgcatggcctacctttgcaaaagtagatggaactgtaacca |
132 |
Q |
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||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| || |
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| T |
42082086 |
agcctgagtatgacagcagaatacgattaagttatgttctccagaagatgggccaagcctgcagggcctacctttgccatagtagatggaactgtaagca |
42082185 |
T |
|
| Q |
133 |
tgcgcaatcttaatatgataactatagattttggtagttggaatgctcctttcagatgattgtgaggaaaataaattctacaaaatggagagaacggtta |
232 |
Q |
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|||| ||||| ||| ||||| || |||||||||||| ||||||| | ||| || |||| |||||||||||| ||||||||||||||||||| ||| |
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| T |
42082186 |
tgcggttgattaatgtgaaaactacaggttttggtagttgaaatgctcttgtcaaataattgcgaggaaaataaaatctacaaaatggagagaacattta |
42082285 |
T |
|
| Q |
233 |
taacactatctattcattgacc |
254 |
Q |
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|| ||||||||||||||||||| |
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| T |
42082286 |
tagcactatctattcattgacc |
42082307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 722 - 784
Target Start/End: Complemental strand, 10711491 - 10711429
Alignment:
| Q |
722 |
aagtcttaaaatgtcttgagaaattctagttcattttataaacatcaatcattgaacaaatta |
784 |
Q |
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||||||||||||||||| | || |||| |||||||| |||||| ||||||||| |||||||| |
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| T |
10711491 |
aagtcttaaaatgtcttcaagaagtctaattcattttgtaaacaccaatcattgtacaaatta |
10711429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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