View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15095_low_5 (Length: 289)
Name: NF15095_low_5
Description: NF15095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15095_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 30686190 - 30686367
Alignment:
| Q |
1 |
tggtaaatgaacacgaaaaaccaaataacatcctattcttactttttgagatgagacccgtaaaaaa-ttagtaacaaaattagagacnnnnnnntatga |
99 |
Q |
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| T |
30686190 |
tggtaaatgaatacgaaaaaccaaataacaccctattcttacttgttgagatgagacctataaaaaaattagtaacaaaattagagacaaaaaaatatga |
30686289 |
T |
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| Q |
100 |
aattcatcaccaattctttagacgaatttcacattttctcctctcaaaattttcatcactaatttatttatttatttt |
177 |
Q |
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| T |
30686290 |
aattcatcaccaattctttagacgaatttcacattttctcctctcaaaattttcatcactaatttatttatttatttt |
30686367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 125 - 248
Target Start/End: Complemental strand, 30683434 - 30683313
Alignment:
| Q |
125 |
atttcacattttctcctctcaaaattttcatcactaatttatttatttattttacttgcaatatgtccttactcttggatatcatatatatgatgcagca |
224 |
Q |
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||||||||| || ||||||| |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||| |||||| |
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| T |
30683434 |
atttcacatcttttcctctctaaattttcgtcactaatttac--atttattttacttgcaagatatccttactcttggatatcatatacatgacgcagca |
30683337 |
T |
|
| Q |
225 |
agtattagggtttggatcataaac |
248 |
Q |
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| T |
30683336 |
agtattagggtttggatcataaac |
30683313 |
T |
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