View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15095_low_6 (Length: 267)

Name: NF15095_low_6
Description: NF15095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15095_low_6
NF15095_low_6
[»] chr1 (2 HSPs)
chr1 (84-252)||(30696950-30697119)
chr1 (191-252)||(30687963-30688023)
[»] chr6 (2 HSPs)
chr6 (1-89)||(27878644-27878732)
chr6 (1-89)||(30967702-30967790)
[»] chr8 (1 HSPs)
chr8 (1-89)||(9444027-9444115)
[»] chr5 (1 HSPs)
chr5 (1-89)||(41718704-41718792)
[»] chr4 (4 HSPs)
chr4 (1-89)||(30950118-30950206)
chr4 (1-89)||(48701756-48701844)
chr4 (1-89)||(42266197-42266285)
chr4 (45-86)||(1999189-1999230)
[»] chr3 (2 HSPs)
chr3 (1-89)||(5823210-5823298)
chr3 (1-89)||(2817198-2817286)
[»] chr2 (2 HSPs)
chr2 (1-89)||(825773-825861)
chr2 (1-69)||(15603191-15603259)
[»] chr7 (2 HSPs)
chr7 (1-69)||(25441073-25441141)
chr7 (42-89)||(8139940-8139987)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 30697119 - 30696950
Alignment:
Q  84 caaaattaaatgtatgtatcatccttagctaggatttcatattctttccatcataacgttcacttcaataatctcccttcgatagaaa-tggtttcatga 182  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |    
T  30697119 caaaattaaatgtatgtatcatccttagctaggatttcacattctttccatcataacgttcacttcaatagtctcccttcgatagaaaatggtttcataa 30697020  T
Q  183 agtaaacagatgctagtttgcctaactttatattttttctttgattcacactgataaaatatctaatact 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30697019 agtaaacagatgctagtttgcctaactttatattttttctttgattcacactgataaaatatctaatact 30696950  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 30688023 - 30687963
Alignment:
Q  191 gatgctagtttgcctaactttatattttttctttgattcacactgataaaatatctaatact 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  30688023 gatgctagtttgcctaactttatattttt-ctttgattcacacagataaaatatctaatact 30687963  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27878644 - 27878732
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27878644 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagagtaacaaaat 27878732  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 30967790 - 30967702
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30967790 ttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagagtaacaaaat 30967702  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9444027 - 9444115
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  9444027 ttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaat 9444115  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 41718792 - 41718704
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  41718792 ttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaat 41718704  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30950118 - 30950206
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  30950118 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagagtaacaaaat 30950206  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48701756 - 48701844
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  48701756 ttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaat 48701844  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 42266285 - 42266197
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  42266285 ttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagagtaacaaaat 42266197  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
Q  45 aaccaagggctctgataccactgttaggtaccagagtaacaa 86  Q
    ||||||| |||||||||||||||||||||| |||| ||||||    
T  1999230 aaccaagtgctctgataccactgttaggtatcagaataacaa 1999189  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 5823210 - 5823298
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5823210 ttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaat 5823298  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2817198 - 2817286
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    |||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  2817198 ttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagagtaacaaaat 2817286  T

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Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 825861 - 825773
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  825861 ttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaat 825773  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15603259 - 15603191
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 69  Q
    ||||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| |||||||    
T  15603259 ttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgtt 15603191  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25441141 - 25441073
Alignment:
Q  1 ttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 69  Q
    |||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
T  25441141 ttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 8139940 - 8139987
Alignment:
Q  42 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaat 89  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaat 8139987  T

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