View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15095_low_7 (Length: 248)
Name: NF15095_low_7
Description: NF15095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15095_low_7 |
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| [»] chr6 (9 HSPs) |
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| [»] scaffold1207 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 11170580 - 11170350
Alignment:
| Q |
18 |
attaagaggctgaagactgcttgcgagaaagcaaaatgtacactttcatccaataatcagactgagatcgagatagattgtttatataaaggtgaagatt |
117 |
Q |
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| T |
11170580 |
attaggaggctgaagactgcttgcgagagagcaaaatgtacactttcatccaataataagactgacatcgagatagattgtttatataaaggtgaagatt |
11170481 |
T |
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| Q |
118 |
tctcctcagggattagtcgtggacttttcgacaatctcagcaagaatctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggat |
217 |
Q |
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||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11170480 |
tctcctcagtgattagtcgtggaattttcgacaatctcagtaagagtctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggat |
11170381 |
T |
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| Q |
218 |
agtgaaaagtaacattcatgatgttgtgctt |
248 |
Q |
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| T |
11170380 |
agtgaagagtaaaattcatgatgttgtgctt |
11170350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 11209397 - 11209172
Alignment:
| Q |
23 |
gaggctgaagactgcttgcgagaaagcaaaatgtacactttcatccaataatcagactgagatcgagatagattgtttatataaaggtgaagatttctcc |
122 |
Q |
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||||||||||||||||||||||| ||||||| | | |||||| ||||| | |||| | || ||||||||||||||| || ||||| ||||||| | |
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| T |
11209397 |
gaggctgaagactgcttgcgagagagcaaaaaggatactttctgtcaatactgcgactaacattgagatagattgtttaaatgaaggtaaagattttttg |
11209298 |
T |
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| Q |
123 |
tcagggattagtcgtggacttttcgacaatctcagcaagaatctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtga |
222 |
Q |
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| T |
11209297 |
tcaacgattagtcgtgcaaagttcgacgatctcaacaagagtctttttgaccagtgcatggagattgtagaaaagtgtatagaagatagtgggatagtga |
11209198 |
T |
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| Q |
223 |
aaagtaacattcatgatgttgtgctt |
248 |
Q |
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| T |
11209197 |
agagtaacattcatgatgttgtgctt |
11209172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 11275964 - 11275734
Alignment:
| Q |
18 |
attaagaggctgaagactgcttgcgagaaagcaaaatgtacactttcatccaataatcagactgagatcgagatagattgtttatataaaggtgaagatt |
117 |
Q |
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|||| ||||||||||||||||||||||| || |||| | | |||||| ||||| | ||||| || |||||||| |||||| | ||||| ||||| |
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| T |
11275964 |
attaggaggctgaagactgcttgcgagagagtaaaaaggatactttctgtcaatagtgagactaccattgagatagaatgtttaaaccaaggtacagatt |
11275865 |
T |
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| Q |
118 |
tctcctcagggattagtcgtggacttttcgacaatctcagcaagaatctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggat |
217 |
Q |
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| T |
11275864 |
tctcctcgttgattagtcgtgcaaagttcgatgatctcaacaagagtcttttttaccagtgcatggaaattgtagaaaagtgtatagcagatagtgggat |
11275765 |
T |
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| Q |
218 |
agtgaaaagtaacattcatgatgttgtgctt |
248 |
Q |
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| T |
11275764 |
aaacaagagtaacattcatgatgttgtgctt |
11275734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 11315049 - 11315121
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgtgctt |
248 |
Q |
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| T |
11315049 |
gtgcatgaagattgtagaaaagtgtctagaggatagtgggatggtcaagagtgacattcatgatgttgtgctt |
11315121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 11160989 - 11160921
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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| T |
11160989 |
gtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgt |
11160921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 11199565 - 11199497
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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| T |
11199565 |
gtgcatggagattgtagaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgt |
11199497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 11156122 - 11156054
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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| T |
11156122 |
gtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgt |
11156054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 11196575 - 11196507
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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| T |
11196575 |
gtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgt |
11196507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 11241739 - 11241807
Alignment:
| Q |
176 |
gtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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| T |
11241739 |
gtgcatggagattgtggaaaagtgtataattgatagtgggatggacaagagtagcattcatgatgttgt |
11241807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 765 - 672
Alignment:
| Q |
151 |
atctcagcaagaatctttttgaccggtgcatggagagtgtagaaaagtgtatagaagatagtgggatagtgaaaagtaacattcatgatgttgt |
244 |
Q |
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|||||| ||||| ||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||| || |||||| ||||||||||||| |
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| T |
765 |
atctcaacaagagtctttttaaccagtgcatggagagtgtagaaaactgtatagcagatagtgggataaacaagagtaactttcatgatgttgt |
672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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