View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15095_low_8 (Length: 247)
Name: NF15095_low_8
Description: NF15095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15095_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1842529 - 1842292
Alignment:
| Q |
1 |
ttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgcattaatttatatcaatagcatagtaaatg |
100 |
Q |
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| T |
1842529 |
ttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagcgttgctcctactcctgcattaatttatatcaatagcatagtaaatg |
1842430 |
T |
|
| Q |
101 |
aacatgctaatgcaagaattatnnnnnnnnnnnnnnnnnnnntgaatttaaacaaaatcaatagggcatgcttagttgcttaccaataacagtgagtggt |
200 |
Q |
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| T |
1842429 |
aacatgctaatgtaagaattataaaaaaagtgaggaaaaaaatgaatttaaacaaaatcaatagggcatgcttagttgcttaccaataacagtgagtggt |
1842330 |
T |
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| Q |
201 |
aatattagagttgcttttgtctggcacccgctttcctt |
238 |
Q |
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|||||| |||||||||||||||||||||| |||||||| |
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| T |
1842329 |
aatattggagttgcttttgtctggcaccctctttcctt |
1842292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1868114 - 1868043
Alignment:
| Q |
1 |
ttccttttatggtatattaagtacgagaatgtcccaaccaaaagaagaataagtgttgctcctactcctgca |
72 |
Q |
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||||| |||||||| ||||||||||||||||| || | || |||||||||| |||| ||||||||||||| |
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| T |
1868114 |
ttcctcttatggtacattaagtacgagaatgttcccaaaaagagaagaataaatgttattcctactcctgca |
1868043 |
T |
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