View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15096_high_2 (Length: 538)
Name: NF15096_high_2
Description: NF15096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15096_high_2 |
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| [»] scaffold0651 (3 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 3921 - 4409
Alignment:
| Q |
18 |
tctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatat |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3921 |
tctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatat |
4020 |
T |
|
| Q |
118 |
gtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataata |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4021 |
gtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataata |
4120 |
T |
|
| Q |
218 |
tatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttatgcttgagacccctttgcacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| || |||||||| |||| ||||||| |
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| T |
4121 |
tatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacctaagcttgagagccctctgcacaa |
4220 |
T |
|
| Q |
318 |
tcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccacaaatcaacaaagtgcccaatct |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || |
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| T |
4221 |
tcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaaccacaaatcaataaagtgcccaacct |
4320 |
T |
|
| Q |
418 |
tgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcagcaacctgttgccatt |
506 |
Q |
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| T |
4321 |
cgttgccagaagccatagaatcacccttatcaatattactgcttctgttacaccgctcttcactagcatctcagcaacctgttggcatt |
4409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 192 - 529
Target Start/End: Complemental strand, 1730 - 1393
Alignment:
| Q |
192 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1730 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
1631 |
T |
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| Q |
292 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
391 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1630 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
1531 |
T |
|
| Q |
392 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
491 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
1431 |
T |
|
| Q |
492 |
caacctgttgccattcaaaatttacaacataattttcc |
529 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
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| T |
1430 |
caacctgttgccattcaaaatttacgacataattttcc |
1393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 1900 - 1799
Alignment:
| Q |
34 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagt |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| || |
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| T |
1900 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaaaatatcctctttcttatgt |
1801 |
T |
|
| Q |
134 |
at |
135 |
Q |
| |
|
|| |
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|
| T |
1800 |
at |
1799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 31319749 - 31319261
Alignment:
| Q |
18 |
tctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319749 |
tctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatat |
31319650 |
T |
|
| Q |
118 |
gtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataata |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319649 |
gtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgtgagtgtacaaaatggcactttgcagcaaggttgaagaaataata |
31319550 |
T |
|
| Q |
218 |
tatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttatgcttgagacccctttgcacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| || |||||||| |||| ||||||| |
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| T |
31319549 |
tatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacctaagcttgagagccctctgcacaa |
31319450 |
T |
|
| Q |
318 |
tcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccacaaatcaacaaagtgcccaatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||| || |
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|
| T |
31319449 |
tcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaaccacaaatcaataaagtgcccaacct |
31319350 |
T |
|
| Q |
418 |
tgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcagcaacctgttgccatt |
506 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||||||||||| ||||| | |||||| | | |||||||||||||||||| |||| |
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| T |
31319349 |
cgttgccagaagccatagaatcacccttatcaatattactgcttctgttacaccgctcttcactagcatctcagcaacctgttggcatt |
31319261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 192 - 529
Target Start/End: Complemental strand, 31331816 - 31331479
Alignment:
| Q |
192 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
291 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
31331816 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
31331717 |
T |
|
| Q |
292 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
391 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31331716 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
31331617 |
T |
|
| Q |
392 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
491 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331616 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
31331517 |
T |
|
| Q |
492 |
caacctgttgccattcaaaatttacaacataattttcc |
529 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31331516 |
caacctgttgccattcaaaatttacgacataattttcc |
31331479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 31332002 - 31331885
Alignment:
| Q |
18 |
tctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31332002 |
tctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaaaat |
31331903 |
T |
|
| Q |
118 |
gtccgctttcttaagtat |
135 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
31331902 |
atcctctttcttatgtat |
31331885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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