View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15096_high_6 (Length: 295)
Name: NF15096_high_6
Description: NF15096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15096_high_6 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 23718558 - 23718267
Alignment:
| Q |
1 |
tggaataccctctccttcttctcaagctttgcacaaactttcttcaattctcggtatgtttcttgtnnnnnnnntctacatannnnnnnnnnnccagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
23718558 |
tggaataccctctccttcttctcaagctttgcacaaactttcttcaattctcggtatgtttcttgtaaaaaaaatctacatatttttttt---ccagttt |
23718462 |
T |
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| Q |
101 |
aatgagggttcagtttgagaaattggggtttatgggtattttaagtgatggttgttgtgaaaattgttggtcttgtgtttgtgttaatgactctttggat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23718461 |
aatgagggttcagtttgagaaattggggtttatgggtattttaagtggtggttgttgtgaaaattgttggtcttgtgtttgtgttaatgactctttggat |
23718362 |
T |
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| Q |
201 |
tgtttggttttgaagtgtgagaatgtacttgaataagttacatagctgaaccagtaatatgagtagttgttaattgtgatgaatttaggtaactt |
295 |
Q |
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| T |
23718361 |
tgtttggttttgaagtgtgagaatgtacttgaataagttacatagctgaaccagtaatatgagtagttgttaattgtgatgaatttaggtaactt |
23718267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 24106230 - 24105939
Alignment:
| Q |
1 |
tggaataccctctccttcttctcaagctttgcacaaactttcttcaattctcggtatgtttcttgtnnnnnnnntctacatannnnnnnnnnnccagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
24106230 |
tggaataccctctccttcttctcaagctttgcacaaactttcttcaattctcggtatgtttcttgtaaaaaaaatctacatatttttttt---ccagttt |
24106134 |
T |
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| Q |
101 |
aatgagggttcagtttgagaaattggggtttatgggtattttaagtgatggttgttgtgaaaattgttggtcttgtgtttgtgttaatgactctttggat |
200 |
Q |
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| T |
24106133 |
aatgagggttcagtttgagaaattggggtttatgggtattttaagtggtggttgttgtgaaaattgttggtcttgtgtttgtgttaatgactctttggat |
24106034 |
T |
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| Q |
201 |
tgtttggttttgaagtgtgagaatgtacttgaataagttacatagctgaaccagtaatatgagtagttgttaattgtgatgaatttaggtaactt |
295 |
Q |
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| T |
24106033 |
tgtttggttttgaagtgtgagaatgtacttgaataagttacatagctgaaccagtaatatgagtagttgttaattgtgatgaatttaggtaactt |
24105939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 36206745 - 36206840
Alignment:
| Q |
200 |
ttgtttggttttgaagtgtgagaatgtacttgaataagttacatagctgaaccagtaatatgagtagttgttaattgtgatgaatttaggtaactt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| ||||| | |||||||| |
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| T |
36206745 |
ttgtttggttttgaagtgtgagaatgtacttgaataagttgcataaatgaacttgtaatatgagtagttgttagttgtgttgaatctgggtaactt |
36206840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 36206641 - 36206702
Alignment:
| Q |
98 |
tttaatgagggttcagtttgagaaattggggtttatgggtattttaagtgatggttgttgtg |
159 |
Q |
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|||||||| |||| ||||||||||||| |||| ||||||||||||||| | ||||||||||| |
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| T |
36206641 |
tttaatgaaggtttagtttgagaaattagggtgtatgggtattttaagcggtggttgttgtg |
36206702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36206548 - 36206609
Alignment:
| Q |
1 |
tggaataccctctccttcttctcaagctttgcacaaactttcttcaattctcggtatgtttctt |
64 |
Q |
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|||||||||||||||||||||| ||| || || ||||||||||||||||| | | |||||||| |
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| T |
36206548 |
tggaataccctctccttcttct--agcgttacagaaactttcttcaattctggatttgtttctt |
36206609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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