View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15096_low_3 (Length: 473)
Name: NF15096_low_3
Description: NF15096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15096_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 7545425 - 7545867
Alignment:
| Q |
16 |
atgaaatatttagcaaaatacaagaacaaatatagattcaaaatgtttatcctcttaatgtgagagttgtaagatgttatttaaatcaaccgagttgtat |
115 |
Q |
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| T |
7545425 |
atgaaatatttagcaaaatacaagaacaaatatagattcaaaatgtttatcctcttaatgtgagagttgtaagatgttatttaaatcaaccgagttgtat |
7545524 |
T |
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| Q |
116 |
ttatgcactaatatccttgtgatgacaccctttcattacagaatgttagtgtctttttaaagatacttcacggtcttttgtgcaagtattagcatgtttt |
215 |
Q |
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| T |
7545525 |
ttatgcactaatatccttgtgatgacaccctttcattacagaatgttagtgtctttttaaagatacttcacggtcttttgtgcaagtattagcatgtttt |
7545624 |
T |
|
| Q |
216 |
agttgatttttgtaatgagttgaagaaatcgtcatgaagctgaagatttgcattaaagacctttgaaacatatcacattcgcccaaaccagaaaattatg |
315 |
Q |
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| T |
7545625 |
agttgatttttgtaatgagttgaagaaatcgtcatgaagctgaagatttgcattaaagacctttgaaacatatcacattcgcccaaaccagaaaattatg |
7545724 |
T |
|
| Q |
316 |
tggttgtgtcgtgctttttacaagaagtatcaagtgatctcttgggatatagtcactacggatgttaggaatgggataaagaatgaagaaaaaggatgac |
415 |
Q |
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| T |
7545725 |
tggttgtgtcgtgctttttacaagaagtatcaagtgatctcttgggatatagtcactacggatgttaggaatgggataaagaatgaagaaaaaggatgac |
7545824 |
T |
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| Q |
416 |
acaagctgctggaggctgcacatcgcgcgggaactgaataaaa |
458 |
Q |
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| T |
7545825 |
acaagctgctggaggctgcacatcgcgcgggaactgaataaaa |
7545867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 30301553 - 30301476
Alignment:
| Q |
297 |
cccaaaccagaaaattatgtggttgtgtcgtgctttttacaagaagtatcaagtgatctcttgggatatagtcactac |
374 |
Q |
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| T |
30301553 |
cccaaaccaaacaattatgtggttgtgctatgctttttacaagatgtatcaagtgatctctttgggtatggtcactac |
30301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 23564689 - 23564609
Alignment:
| Q |
297 |
cccaaaccagaaaattatgtggttgtgtcgtgctttttacaagaagtatcaagtgatctcttgggatatagtcactacggat |
378 |
Q |
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| T |
23564689 |
cccaaaccagacaattgtgtggtcatgctatgctttttacaagat-tatcaagtgatctcttgggatgtagtcaccacggat |
23564609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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