View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15096_low_4 (Length: 370)
Name: NF15096_low_4
Description: NF15096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15096_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 10011202 - 10010863
Alignment:
| Q |
17 |
aaacaggagcacctctcttctatannnnnnncataggttcgattggtctttcttccataaaaaccnnnnnnnnnnttgcttcttctttgtttaaaggaaa |
116 |
Q |
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| T |
10011202 |
aaacaggagcacctctcttctatatttttttcataggttcgattggtctttcttccataaaaaccaaaaaaaaaattgcttcttttttgtttaaaggaaa |
10011103 |
T |
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| Q |
117 |
gtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatggaaggtgttcgttttgtttacacc |
216 |
Q |
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| T |
10011102 |
gtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgctgcatgtgcatggaaggtgttcgttttgtttacacc |
10011003 |
T |
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| Q |
217 |
tgttcttatttgtttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattagagtatctgagcgttgtgcgtgac |
316 |
Q |
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| T |
10011002 |
tgttcttatttggttatcttttgtttacatattttcctaggttcaacaggttttaaaattgtttctctgaatattagagtatctgagcgttgtgcgtgac |
10010903 |
T |
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| Q |
317 |
ggctgttgtcagggagaacggaaagtttggatttagtgtc |
356 |
Q |
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| T |
10010902 |
ggctgttgtcagtgagaacggaaagtttggatttagtgtc |
10010863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 561487 - 561424
Alignment:
| Q |
102 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaa |
165 |
Q |
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| T |
561487 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaatgagagaacttggtgttaa |
561424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 17688937 - 17689007
Alignment:
| Q |
96 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaatgg---aaggagagaacttggtgtt |
163 |
Q |
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| T |
17688937 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaataatgagagaacttggtgtt |
17689007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 1678795 - 1678749
Alignment:
| Q |
96 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
142 |
Q |
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| T |
1678795 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
1678749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 4778852 - 4778812
Alignment:
| Q |
102 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
142 |
Q |
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| T |
4778852 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
4778812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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