View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15096_low_5 (Length: 305)
Name: NF15096_low_5
Description: NF15096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15096_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 43654991 - 43654715
Alignment:
| Q |
19 |
ctccctacaattgctcaaaaatccaaccactataggttgagctatagtcaactaccgttcgcagcaaatcagaagttaagtaccattcgccannnnnnng |
118 |
Q |
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| T |
43654991 |
ctccctacaattgctcaaaaatccaactactataggttgagctatagtcaactaccgttcgccacaaattagaagttaagtaccattcggcatttttttg |
43654892 |
T |
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| Q |
119 |
attggttcaatcacttatttaaaaagtcatttaaatggtagttagctgctgttggaggtattttcgtcagttcagagtgtcagagagcaaacaatggatg |
218 |
Q |
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| T |
43654891 |
attggttcaatcacttatttaaaaagtcatttaaatggtagttagctgctgttagaggtattttcgtcagttcagagtgccagagagcaaacaatggatg |
43654792 |
T |
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| Q |
219 |
cttaaagagcaattttcatcaaattttgcacccgaaaagatgggatagtaattaaggtggaagttattattttaccc |
295 |
Q |
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| T |
43654791 |
cttaaagagcaattttcatcaaatttcgcacccgaaaagatgggatagtaattaagatggaagttattattttaccc |
43654715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 9259589 - 9259646
Alignment:
| Q |
177 |
tattttcgtcagttcagagtgtcagagagcaaacaatggatgcttaaagagcaattttc |
235 |
Q |
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| T |
9259589 |
tattttagtcagttcagggtgtt-gagagcaaacaatgaatgcctaaagagcaattttc |
9259646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 35456393 - 35456320
Alignment:
| Q |
157 |
tagttagctgctgttggaggtattttcgtcagttcagagtgtcagagagcaaacaatggatgcttaaagagcaa |
230 |
Q |
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| T |
35456393 |
tagttaactgttgttgaaggtattttcgtcaattaagagtgtctgtgagcaaattatggatgcctaatgagcaa |
35456320 |
T |
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