View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15097_high_1 (Length: 460)
Name: NF15097_high_1
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15097_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 181 - 441
Target Start/End: Complemental strand, 32536007 - 32535747
Alignment:
| Q |
181 |
catataatagaacaccaataatgatacggttttcaattactatttatttctaagttttattgatggaagccataaaaatagtgtgtacataaactatagt |
280 |
Q |
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| T |
32536007 |
catataattgaacaccaataatgatacggttttcaattactatttatttctaagttttattgatggaagccataaaaatagtgtgtacataaactatagt |
32535908 |
T |
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| Q |
281 |
gttatattgcagaacaacaacattggtctccttgacaatggcctggttgacctagacctagacctgcacacttcagtacgcaaccagttggacacgtcgt |
380 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32535907 |
gttatattgcagcacaacaacattggtctccttgacaatggcctggttgacctagacctagacctgcacacttcagtatgcaaccagttggacacgtcgt |
32535808 |
T |
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| Q |
381 |
gccaccaaaacaatgcacaagcttgggagtgaatttgtcttcatttgttgctccacctaca |
441 |
Q |
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| T |
32535807 |
gccaccaaaacaatgcacaagcttgtgagtgaatttgtcttcatttgttgctccacctaca |
32535747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 32536214 - 32536034
Alignment:
| Q |
1 |
tacaaaaacatttatagtatataatttcgtctccattaatcaaaattctttgatccatccctacatattcataattcataaaataatttttctacctacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
32536214 |
tacaaaaacatttatagtatataatttcgtctccattaatcaaaattctttgatccatccctaca-attcataattcataaaataatttttcgacctacg |
32536116 |
T |
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| Q |
101 |
tgatgataaagtcgaattataaacacttagcatacaacaaacacaat--cacccatgcagatttctcaaagtagcagtgata |
180 |
Q |
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| T |
32536115 |
tgatgataaagtcgaattataaacccttagcatacaacaaacacaatcacacgcatgcagatttctcaaagtagcagtgata |
32536034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 198 - 410
Target Start/End: Original strand, 31447372 - 31447585
Alignment:
| Q |
198 |
ataatgatacggttttcaattactatttatttctaagttttattgatggaagccataaaaatagtgtgta--cataaactatagtgttatattgcagaac |
295 |
Q |
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|||| |||| ||||||| |||| ||||||||||||| | | ||||||||||||||||||||||||| | | ||||||||||||||||||||||||| || |
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| T |
31447372 |
ataaagatatggttttccattagtatttatttctaactatcattgatggaagccataaaaatagtg-gaagccataaactatagtgttatattgcagcac |
31447470 |
T |
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| Q |
296 |
aacaacattggtctccttgacaatggcctggttgacctagacctagacctgcacacttcagtacgcaaccagttggacacgtcgtgccaccaaaacaatg |
395 |
Q |
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| T |
31447471 |
aacaacattggtttccttgacaatggcctggttgacctagacctagacctgcacacttctgtatgcaaccaactggacacgacacaccacgaaaacaatg |
31447570 |
T |
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| Q |
396 |
cacaagcttgggagt |
410 |
Q |
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| T |
31447571 |
cgcaagcttgggagt |
31447585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 31447215 - 31447331
Alignment:
| Q |
64 |
catattcataattcataaaataatttttctacctacgtgatgataaagtcgaattataaacacttagcatacaacaaacacaatcacccatgcagatttc |
163 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
31447215 |
catattcataatccataaaataatttttctacctacgtgacgataaagtcgaattataaacacttagcatacaacaaacacaatcacccatgtatatttc |
31447314 |
T |
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| Q |
164 |
tcaaagtagcagtgata |
180 |
Q |
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||||| ||||||||||| |
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| T |
31447315 |
tcaaactagcagtgata |
31447331 |
T |
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