View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15097_high_10 (Length: 281)
Name: NF15097_high_10
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15097_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 281
Target Start/End: Complemental strand, 32536449 - 32536202
Alignment:
| Q |
34 |
tacataatgcattctcactttatatgccttatatatattgtaatctctaaattttagttgaaacatgttttttacgaataatatatttaacaacttagta |
133 |
Q |
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| T |
32536449 |
tacataatgcattctcactttatatgccatatatatattgtaatctctaaattttagtttaaacatgttttttacgaataacatatttaacaacttagta |
32536350 |
T |
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| Q |
134 |
gattgtgtttgtcttcaaagtttgagtctcaaatattctagttagaactctttcattgtcactcacctcctcaattgaattgtctatttgcgacttaaca |
233 |
Q |
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| T |
32536349 |
gattgtgtttgtcttcaaagtttgagtctcaaatattctagttagaactctttcattgtcactcacctcctcaattgaattgtctatttgcgacttaaca |
32536250 |
T |
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| Q |
234 |
atattttgattataacatgtcaataatatcttttatacaaaaacattt |
281 |
Q |
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| T |
32536249 |
atattttgattataacatgtcaataatatcttttatacaaaaacattt |
32536202 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 7466817 - 7466973
Alignment:
| Q |
71 |
ttgtaatctctaaattttagttgaaacatgtttttt-acgaataatatatttaacaacttagtagattgtgtttgtcttcaaagtttgagtctcaaatat |
169 |
Q |
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|||||||| ||| ||||||||||||| ||||||||| | | |||| ||||||||| || |||||||||| ||||| ||||||||||||||||| |
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| T |
7466817 |
ttgtaatccctatattttagttgaaatatgtttttttatggataacatatttaac------gtggattgtgtttctcttcg--gtttgagtctcaaatat |
7466908 |
T |
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| Q |
170 |
tctagttagaactc--tttcattgtcactcacctcctcaattgaattgtctatttgcgacttaac |
232 |
Q |
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| T |
7466909 |
tctagttagaactcttttttattatttcttaactccttaattgaattgtctatttgcgccttaac |
7466973 |
T |
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