View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15097_high_5 (Length: 397)
Name: NF15097_high_5
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15097_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 3422796 - 3423169
Alignment:
| Q |
7 |
acagaaacaaaaacaagaaagggaagtagacaacaaacaaacttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtac |
106 |
Q |
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| T |
3422796 |
acagaaacagaaacaagaaagggaagtagacaacaaacaaacttgtactgtattcaagacagcctgtggaccatttacccactttcacagaacacagtac |
3422895 |
T |
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| Q |
107 |
aaaatttatgtagattcttcactctccaaaatctatcacagttcatcattagattcatttctgctctttctctttcttgtgaaactatatctttgacctt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3422896 |
aaaatttatgtagattcttcactctccaaaatctatcacagttcatcattagattcatttctgctctttctctttcttgtgaaactatatc-ttgacctt |
3422994 |
T |
|
| Q |
207 |
agacacttcac-tcactttatttg-----attatataactatatcttgctccttttcttaaccttcctttctaaccttaaccaatccacttccttgatcc |
300 |
Q |
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| T |
3422995 |
agacatttcactttatgtaatgtgatgatataatataactatatcttgctccttttcttaaccttcctttctaaccttaaccaatccacttccttgatcc |
3423094 |
T |
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| Q |
301 |
cacattgaagattcacatcaaaacctaagtccttttaatgcttgaaaatgttgaactttttgtgtataatttaaa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3423095 |
cacattgaagattcacatcaaaacctaagtccttttaatgcttgaaaatgttgaactttttgtgtataatttaaa |
3423169 |
T |
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