View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15097_low_12 (Length: 249)
Name: NF15097_low_12
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15097_low_12 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 22353 - 22575
Alignment:
| Q |
20 |
ctctcaatttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaata |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22353 |
ctctcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaata |
22452 |
T |
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| Q |
120 |
cccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22453 |
cccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcaca |
22552 |
T |
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| Q |
220 |
gacggtgaacgccacttcatctc |
242 |
Q |
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||||| ||||||||||||||||| |
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| T |
22553 |
gacggcgaacgccacttcatctc |
22575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 10197735 - 10197513
Alignment:
| Q |
20 |
ctctcaatttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaata |
119 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197735 |
ctctcaatttcaatttcctaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaata |
10197636 |
T |
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| Q |
120 |
cccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10197635 |
cccaaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagcactggaacaacctcaca |
10197536 |
T |
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| Q |
220 |
gacggtgaacgccacttcatctc |
242 |
Q |
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||||| ||||||||||||||||| |
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| T |
10197535 |
gacggcgaacgccacttcatctc |
10197513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 19456868 - 19457086
Alignment:
| Q |
23 |
tcaatttcaatttcccaaaaccaaacatgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaataccc |
122 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19456868 |
tcaatttcaatttcccaaa-ccaaacatgcctgcttttccagaagaaccccttcttgccccaaacccagaccgattctgcatgttcccaatccaataccc |
19456966 |
T |
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| Q |
123 |
aaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgac |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| | |||||||| ||| |
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| T |
19456967 |
aaaaatctgggaaatgtacaaaaaagccgaagcctcattctggaccgctgaagaagtcgatctttcctccgatctcaagcactggcaaaacctcaccgac |
19457066 |
T |
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| Q |
223 |
ggtgaacgccacttcatctc |
242 |
Q |
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|| ||||||||||||||||| |
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| T |
19457067 |
ggcgaacgccacttcatctc |
19457086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 25026214 - 25026005
Alignment:
| Q |
34 |
ttcccaaaaccaaaca-tgcctgcttttccagaagaaccacttctcgcaccaaacccagaccgattctgcatgttcccaatccaatacccaaaaatctgg |
132 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25026214 |
ttcccaaaaccaaacaatgccttctttcccagaagaacctcttctcgctccaaacccagaccgattctgtatgttcccaatccaatacccaaaaatctgg |
25026115 |
T |
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| Q |
133 |
gaaatgtacaaaaaagccgaagcctcattctggaccgccgaagaagttgatctttcctccgatctcaagaactggaacaacctcactgacggtgaacgcc |
232 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||||| |
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| T |
25026114 |
gaaatgtacaaaaaagccgaagcctctttctggaccgccgaagaagtcgatctttcctccgatcttcaacactggaacaacctcaccgacggcgaacgcc |
25026015 |
T |
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| Q |
233 |
acttcatctc |
242 |
Q |
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|||||||||| |
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| T |
25026014 |
acttcatctc |
25026005 |
T |
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