View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15097_low_2 (Length: 435)
Name: NF15097_low_2
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15097_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 39992372 - 39991963
Alignment:
| Q |
18 |
gatttttggtccagaaactcaagtgtcttcttccaaacgaagtctcgttagcgaatctgaatctttcaggatctgttatacacaacacaatgcaccaata |
117 |
Q |
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| T |
39992372 |
gatttttggtccagaaacttaagtgtcttcttccaaacgaagtctcgttagcgaatctgaatctttcaggatctgttatacacaacacaatgcaccaata |
39992273 |
T |
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| Q |
118 |
aatgtatgttcctctaacatagtttataaaactatgtatagacatcgtgtaagtaaaactcaaatgataaagaattgcagagaaatttgatatgttgagg |
217 |
Q |
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| T |
39992272 |
aatgtatgttcctctaacatagtttataaaactatgtatggacatcgtgtaagtaaaactcaaatgataaagaattgcagagaaatttgatatgttgagg |
39992173 |
T |
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| Q |
218 |
cgcgaggttataactgactaaccgtgtgaaaattggtactcaggtgtcttggttgcctcttcccatcttttccaccttctcatctattgagtagaaattg |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39992172 |
cgcgagtttataactgactaaccgtgtgaaaattggtactcaggtgtcttggttgcctcttcccatcttttccaccttctcatctattgagtagaaattg |
39992073 |
T |
|
| Q |
318 |
ataaattttatgtatccaaagaggtaaagaagtttatcttatagtaaaataataattaagtaaaagtagtaaagtatatactattagaatattgtgtttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39992072 |
ataaattttatgtatccaaagaggtaaagaagtttatcttatagtaaaataataattaagtaaaagtagtaaagtatatactattagaatattgtgtttc |
39991973 |
T |
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| Q |
418 |
tacctttgct |
427 |
Q |
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| T |
39991972 |
tacctttgct |
39991963 |
T |
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