View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15097_low_3 (Length: 409)

Name: NF15097_low_3
Description: NF15097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15097_low_3
NF15097_low_3
[»] chr7 (16 HSPs)
chr7 (18-397)||(7327714-7328093)
chr7 (104-397)||(7311481-7311774)
chr7 (320-397)||(7306602-7306679)
chr7 (18-88)||(7311365-7311435)
chr7 (208-353)||(20456085-20456230)
chr7 (297-346)||(21210846-21210895)
chr7 (301-353)||(20414456-20414508)
chr7 (290-340)||(22525580-22525630)
chr7 (290-336)||(22534240-22534286)
chr7 (202-251)||(20414570-20414619)
chr7 (18-73)||(20456359-20456414)
chr7 (208-255)||(21210756-21210803)
chr7 (203-236)||(22525511-22525544)
chr7 (24-77)||(36260106-36260159)
chr7 (206-238)||(21221220-21221252)
chr7 (211-243)||(22534315-22534347)
[»] scaffold0064 (1 HSPs)
scaffold0064 (297-345)||(23807-23855)
[»] chr4 (2 HSPs)
chr4 (289-336)||(2910627-2910674)
chr4 (296-340)||(11982095-11982139)
[»] chr6 (1 HSPs)
chr6 (217-245)||(6954876-6954904)


Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 7328093 - 7327714
Alignment:
Q  18 gagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaatccgattgcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328093 gagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaatccgattgcg 7327994  T
Q  118 tgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagctaaagtttgaatagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327993 tgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagctaaagtttgaatagtt 7327894  T
Q  218 ctccaaacattatcacccaaagtaaaaatgctcacctcaaccttagggttgctaaaattgctattataatgcaaggctacaaccttataagtgttggttg 317  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327893 ttccaaacattatcacccaaagtaaaaatgctcacctcaaccttaggattgctaaaattgctattataatgcaaggctacaaccttataagtgttggttg 7327794  T
Q  318 aattatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7327793 aattatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 7327714  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 104 - 397
Target Start/End: Original strand, 7311481 - 7311774
Alignment:
Q  104 ggaatccgattgcgtgccaaccagttaacagtgcaattaaattgtacaccctcgtaaactctccaataagcaaagtctatctgaagaggcaaaacagcta 203  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||| || || | |||||||||   | ||   | ||||||||||| || || ||    
T  7311481 ggaatccgattgcgtgccaaccagttaaccgtgcagttgaattgtacaccatcatacattctccaatagctatagagaagctgaagaggcacaaaagata 7311580  T
Q  204 aagtttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctcaaccttagggttgctaaaattgctattataatgcaaggctacaacctt 303  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   ||| || | | ||| | ||||||||||||||| ||||||||    
T  7311581 aagtttgtatagttctccaaacattatcacccaaagtgaaaatgctcacctcaaccacggggctgttgacatttccattataatgcaaggccacaacctt 7311680  T
Q  304 ataagtgttggttgaattatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 397  Q
    ||||  ||  ||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||| |||||| ||||||||||||    
T  7311681 ataatagtccgttgaattatcataacaaaacacgaacctccaagaattcgatccataatcgaaatcatcgaaactacctaacctatcagatatt 7311774  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 7306602 - 7306679
Alignment:
Q  320 ttatcataacaaaacacaaacctccaagaattccattcataattgaaatcatcgaaacaacctaatctatcagatatt 397  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  7306602 ttatcataacaaaacacgaacctccaagaattcgatttataattgaaatcatcgaaacagcctgatctatcagatatt 7306679  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 7311365 - 7311435
Alignment:
Q  18 gagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataata 88  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||    
T  7311365 gagggagcatcaactttgtgtatgtctcagtccctatatgtagtgaaataatcacaaattcataaataata 7311435  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 353
Target Start/End: Complemental strand, 20456230 - 20456085
Alignment:
Q  208 ttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctcaaccttagggttgct-aaaattgctattataatgcaaggctacaaccttata 306  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||  | ||||| ||| ||  | ||||   || | | ||| |||||| |||||||||||    
T  20456230 ttgaatacttctccaaacattatcacccaaactaaaaatgctcattttaacctcaggttttttgaaaacatct-tcacaattcaaggccacaaccttata 20456132  T
Q  307 agtgttggttgaattatcataacaaaacacaaacctccaagaattcc 353  Q
     |||| ||||||||||||| |||||||||||||| ||||||| ||||    
T  20456131 tgtgtcggttgaattatcaaaacaaaacacaaacatccaagagttcc 20456085  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 21210846 - 21210895
Alignment:
Q  297 caaccttataagtgttggttgaattatcataacaaaacacaaacctccaa 346  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  21210846 caaccttataagtgtcggttaaattatcataacaaaacacaaacttccaa 21210895  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 20414508 - 20414456
Alignment:
Q  301 cttataagtgttggttgaattatcataacaaaacacaaacctccaagaattcc 353  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||| ||||    
T  20414508 cttataagtgttggttgaatcatcataaccaaacacaaacatccaagagttcc 20414456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 22525580 - 22525630
Alignment:
Q  290 aaggctacaaccttataagtgttggttgaattatcataacaaaacacaaac 340  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||||||||||    
T  22525580 aaggctacaactttataggtgtcggttgaattatcataaccaaacacaaac 22525630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 22534286 - 22534240
Alignment:
Q  290 aaggctacaaccttataagtgttggttgaattatcataacaaaacac 336  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  22534286 aaggctacaaccttataggtgtcggttgaattatcataaccaaacac 22534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 20414619 - 20414570
Alignment:
Q  202 taaagtttgaatagttctccaaacattatcacccaaagtaaaaatgctca 251  Q
    |||| ||| |||| ||||||||||||||||||||||| ||||||||||||    
T  20414619 taaacttttaatacttctccaaacattatcacccaaactaaaaatgctca 20414570  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 20456414 - 20456359
Alignment:
Q  18 gagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcaca 73  Q
    ||||| |||||||||||||||||||||| || |||||||  || ||||||||||||    
T  20456414 gagggggcatcaactttgtgtatgtctcagtacctagatcaagggaaacaatcaca 20456359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 21210756 - 21210803
Alignment:
Q  208 ttgaatagttctccaaacattatcacccaaagtaaaaatgctcacctc 255  Q
    |||||||||| |||||| ||||||||| ||| ||||||||||||||||    
T  21210756 ttgaatagttttccaaatattatcacctaaactaaaaatgctcacctc 21210803  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 22525511 - 22525544
Alignment:
Q  203 aaagtttgaatagttctccaaacattatcaccca 236  Q
    ||||||| ||||||||||||||||||||||||||    
T  22525511 aaagttttaatagttctccaaacattatcaccca 22525544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 36260159 - 36260106
Alignment:
Q  24 gcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaatt 77  Q
    |||||||||||||||||||||| ||  | ||||  |||||||||||||||||||    
T  36260159 gcatcaactttgtgtatgtctctgtttccagatcaagtgaaacaatcacaaatt 36260106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 21221220 - 21221252
Alignment:
Q  206 gtttgaatagttctccaaacattatcacccaaa 238  Q
    |||||||||||||||||||||||||||| ||||    
T  21221220 gtttgaatagttctccaaacattatcactcaaa 21221252  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 22534347 - 22534315
Alignment:
Q  211 aatagttctccaaacattatcacccaaagtaaa 243  Q
    ||||||||||||||||||||||||||| |||||    
T  22534347 aatagttctccaaacattatcacccaaggtaaa 22534315  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 23855 - 23807
Alignment:
Q  297 caaccttataagtgttggttgaattatcataacaaaacacaaacctcca 345  Q
    |||||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  23855 caaccttataagtgttggttaaattctcataaccaaacacaaacttcca 23807  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 2910674 - 2910627
Alignment:
Q  289 caaggctacaaccttataagtgttggttgaattatcataacaaaacac 336  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||||    
T  2910674 caaggccacaaccttataagtgtgagttgaattatcataaccaaacac 2910627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 11982095 - 11982139
Alignment:
Q  296 acaaccttataagtgttggttgaattatcataacaaaacacaaac 340  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||    
T  11982095 acaaccttataagtgtcgcttgaattaacataaccaaacacaaac 11982139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 6954876 - 6954904
Alignment:
Q  217 tctccaaacattatcacccaaagtaaaaa 245  Q
    |||||||||||||||||||||||||||||    
T  6954876 tctccaaacattatcacccaaagtaaaaa 6954904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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