View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15098_low_1 (Length: 457)

Name: NF15098_low_1
Description: NF15098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15098_low_1
NF15098_low_1
[»] chr2 (5 HSPs)
chr2 (31-446)||(2973927-2974342)
chr2 (103-199)||(2973906-2974002)
chr2 (285-413)||(14994434-14994562)
chr2 (1-46)||(2973876-2973921)
chr2 (102-241)||(17826252-17826393)
[»] scaffold1964 (2 HSPs)
scaffold1964 (101-446)||(383-743)
scaffold1964 (8-46)||(747-785)
[»] chr1 (5 HSPs)
chr1 (1-125)||(6949497-6949621)
chr1 (134-199)||(6949516-6949581)
chr1 (103-191)||(47747125-47747213)
chr1 (34-98)||(47747125-47747189)
chr1 (1-44)||(47747200-47747243)
[»] chr3 (3 HSPs)
chr3 (260-407)||(12371430-12371577)
chr3 (1-44)||(12371246-12371289)
chr3 (102-148)||(12371275-12371321)
[»] chr5 (3 HSPs)
chr5 (256-435)||(29755621-29755800)
chr5 (285-417)||(26682417-26682549)
chr5 (284-429)||(13949399-13949544)
[»] chr6 (2 HSPs)
chr6 (260-435)||(30141629-30141804)
chr6 (284-413)||(17392597-17392726)
[»] chr4 (1 HSPs)
chr4 (260-435)||(12354541-12354716)
[»] chr8 (3 HSPs)
chr8 (260-435)||(20528977-20529152)
chr8 (284-405)||(42079874-42079995)
chr8 (1-44)||(10600730-10600773)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 31 - 446
Target Start/End: Original strand, 2973927 - 2974342
Alignment:
Q  31 cagcagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagtactagcagcagctggaacagcactagcagcagc 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2973927 cagcagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagtactagcagcaactggaacagcactagcagcagc 2974026  T
Q  131 gctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagctgttggttgcgtacctgcaggagcaacagac 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974027 gctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagctgttggttgcgtacctgcaggagcaacagac 2974126  T
Q  231 aagcttgcagcagtaaggtcattggaagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacac 330  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2974127 aagcttgcagcagtaaggtcattgcaagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacac 2974226  T
Q  331 ctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatg 430  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2974227 ctttaagttcctatgcttccaaagactccaaaatattgcagccagccgttgagaaagtgtggcagataaagaatgtaacaacgcaaaaattgcctcaatg 2974326  T
Q  431 gccgaggttgatgatg 446  Q
    ||||||||||| ||||    
T  2974327 gccgaggttgacgatg 2974342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 2973906 - 2974002
Alignment:
Q  103 cagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagc 199  Q
    ||||||||||||||||||||||||||||   |||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  2973906 cagcagctggaacagcactagcagcagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagtactagcagc 2974002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 285 - 413
Target Start/End: Complemental strand, 14994562 - 14994434
Alignment:
Q  285 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 384  Q
    ||||||| |||||  | ||| |||||||||||| |||||| ||||| || |  |||||||| ||||||| ||||||||||| || || || || ||||||    
T  14994562 ctctttcaaccaccgtcgcataagtttctgtgatgtcttcgcacactttgacattcctatgcttccaaatactccaaaatagtgcagtcatcctttgaga 14994463  T
Q  385 aagtgtggcagataaagaatgtaacaatg 413  Q
    ||||||||| ||||||||||| |||||||    
T  14994462 aagtgtggcggataaagaatgcaacaatg 14994434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2973876 - 2973921
Alignment:
Q  1 catgctcgggaggctgccaccgcggctggacagcagctggaacagc 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2973876 catgctcgggaggctgccaccgcggctggacagcagctggaacagc 2973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 17826393 - 17826252
Alignment:
Q  102 gcagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtac--taacagc 199  Q
    ||||||||||||||| | || |||  ||||||| |||| | ||||||||| ||||||||| ||||| ||||||| | |||  || ||||||  |||||||    
T  17826393 gcagcagctggaacatcgcttgcaagagcgctagcagcagttggttggaaaacagcaggagcagcatctgttacagtagaagtaacagtacgttaacagc 17826294  T
Q  200 tgttggttgcgtacctgcaggagcaacagacaagcttgcagc 241  Q
    || | | |||||||| ||||||||  ||| |||| |||||||    
T  17826293 tgctagatgcgtaccagcaggagctgcagtcaagtttgcagc 17826252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 101 - 446
Target Start/End: Complemental strand, 743 - 383
Alignment:
Q  101 agcagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagct 200  Q
    |||||||||||||||| |||||||||||||||||||| | ||||||||||  |||||||||| | || || ||||||||||||||||||| ||||||| |    
T  743 agcagcagctggaacatcactagcagcagcgctaacaactgctggttggattacagcaggaataacaactattacggcagagatatcagtgctaacag-t 645  T
Q  201 gttggttgcgtacctgcaggagcaacagacaagcttgcagca---------------gtaaggtcattgg-aagatgccagtcgtcaatcaaggaccgcg 284  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||               |||||| |||| | ||||||||| |||||||||||||||| ||    
T  644 gttggttgcgtacctacaggagcaacatacaagcttgcaacatacaagcttgcaacagtaaggccatttgcaagatgccaatcgtcaatcaaggaccacg 545  T
Q  285 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 384  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||    
T  544 ctctttccaccactattgctcaagtttccgtgacgtcttgccacacctttaagttcctatgcttccaaagactccaaaatattgcaaccaaccgttgaga 445  T
Q  385 aagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccgaggttgatgatg 446  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||    
T  444 aagtgtggcagataaagaatataacaatgcaaaaattgcctcaatggccgagggtgacgatg 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 785 - 747
Alignment:
Q  8 gggaggctgccaccgcggctggacagcagctggaacagc 46  Q
    |||||||||||||||||||||||||||||||||||||||    
T  785 gggaggctgccaccgcggctggacagcagctggaacagc 747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6949621 - 6949497
Alignment:
Q  1 catgctcgggaggctgccaccgcggctggacagcagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagtact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||    
T  6949621 catgctcgggaggctgccaccgcggctggacagcagctggaacagctgctggttggaagacagcaggaacaacagctattacggcagagatatcagtact 6949522  T
Q  101 agcagcagctggaacagcactagca 125  Q
    |||||||||||||||| ||||||||    
T  6949521 agcagcagctggaacaacactagca 6949497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 6949581 - 6949516
Alignment:
Q  134 aacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagtactaacagc 199  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  6949581 aacagctgctggttggaagacagcaggaacaacagctattacggcagagatatcagtactagcagc 6949516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 47747213 - 47747125
Alignment:
Q  103 cagcagctggaacagcactagcagcagcgctaacagcggctggttggaagacagcaggaacagcagctgttacggcagagatatcagta 191  Q
    |||||| ||||||| |||||||| ||||   |||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||||    
T  47747213 cagcagttggaacaacactagcaacagctggaacagctgctggttggaatacagcaggaacagcagctattacggcagggatgtcagta 47747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 47747189 - 47747125
Alignment:
Q  34 cagctggaacagctgctggttggaagacaacaggaacagcagctgttacgacagagatatcagta 98  Q
    ||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||| ||| ||||||    
T  47747189 cagctggaacagctgctggttggaatacagcaggaacagcagctattacggcagggatgtcagta 47747125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47747243 - 47747200
Alignment:
Q  1 catgctcgggaggctgccaccgcggctggacagcagctggaaca 44  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  47747243 catgctcgggaggctgccaccgcggctggacagcagttggaaca 47747200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 260 - 407
Target Start/End: Original strand, 12371430 - 12371577
Alignment:
Q  260 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 359  Q
    ||||| || |||| ||| ||||| |||||||| |||||| ||||||||||||| || || ||||||||||||||||  |||||||| |||||||||||||    
T  12371430 tgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttccgtaacatcttcccacacctttatattcctatgtttccaaagactcc 12371529  T
Q  360 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgta 407  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  12371530 aaaatattgcagccaaccgttgagaaagtgtggcagatagagactgta 12371577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12371246 - 12371289
Alignment:
Q  1 catgctcgggaggctgccaccgcggctggacagcagctggaaca 44  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  12371246 catgctcgggaggctgccaccgcagctgggcagcagctggaaca 12371289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 12371275 - 12371321
Alignment:
Q  102 gcagcagctggaacagcactagcagcagcgctaacagcggctggttg 148  Q
    ||||||||||||||| || | ||||||||||||||||| ||||||||    
T  12371275 gcagcagctggaacatcaattgcagcagcgctaacagctgctggttg 12371321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 256 - 435
Target Start/End: Original strand, 29755621 - 29755800
Alignment:
Q  256 aagatgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaaga 355  Q
    ||||||||| || ||| |||||||||||||||| || || ||| |||||||||| || || | ||||||||||||||||| ||||||||| ||||||||     
T  29755621 aagatgccattcatcagtcaaggaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacacctttatgttcctatgcttccaaagg 29755720  T
Q  356 ctccaaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 435  Q
    |||||||| ||||  ||||||||||| || || ||  |||||||||| |||| ||| |||||||| ||||||||||||||    
T  29755721 ctccaaaaaattgctgccagccgttgggagagcgtaacagataaagattgtagcaaagcaaaaatggcctcaatggccga 29755800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 417
Target Start/End: Complemental strand, 26682549 - 26682417
Alignment:
Q  285 ctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgaga 384  Q
    ||||||| |||||| |||| ||||||||  | || |||||| |||||||||  |||||||| |||||||||||||||||||||| ||||| ||||||| |    
T  26682549 ctctttcaaccactgttgcgcaagtttccataacatcttcctacacctttatattcctatgtttccaaagactccaaaatattgcagccaaccgttgaaa 26682450  T
Q  385 aagtgtggcagataaagaatgtaacaatgcaaa 417  Q
    ||||||||  |||| ||| |||| ||| |||||    
T  26682449 aagtgtggtggatagagagtgtagcaaagcaaa 26682417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 429
Target Start/End: Original strand, 13949399 - 13949544
Alignment:
Q  284 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 383  Q
    |||||||| |||||| | ||| |||||||||| | || ||||||||| || |  |||||||| ||||||| ||||||||| | || ||||| || || ||    
T  13949399 gctctttcaaccactgtcgcataagtttctgttatgttttcccacactttgacattcctatgcttccaaatactccaaaaaagtgcagccatcctttaag 13949498  T
Q  384 aaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaat 429  Q
    || | |||  |||||||||||| ||||| | |||||| || |||||    
T  13949499 aatgcgtgaaagataaagaatgcaacaaggaaaaaatagcttcaat 13949544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 260 - 435
Target Start/End: Original strand, 30141629 - 30141804
Alignment:
Q  260 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 359  Q
    ||||| |||||  ||||||||| |||||| ||||| ||| |||||||||| || || | ||||||||||| ||||| ||||||||| |||||||| ||||    
T  30141629 tgccattcgtccgtcaaggaccacgctctatccacaactgttgcacaagtctccgtaatgtcttcccacaactttatgttcctatgcttccaaaggctcc 30141728  T
Q  360 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 435  Q
    |||| ||||  ||||||||||| || || ||  |||||||||| |||||||| |||||||| ||||||||||||||    
T  30141729 aaaaaattgctgccagccgttgggagagcgtaacagataaagattgtaacaaagcaaaaatggcctcaatggccga 30141804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 17392597 - 17392726
Alignment:
Q  284 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 383  Q
    |||||||| ||||| ||  ||||||||| |||  |||| |||||||| || |  |||||||| |||||||  |||||||||| ||  |||| || |||||    
T  17392597 gctctttcaaccaccatcacacaagtttatgtttcgtcatcccacactttaacattcctatgcttccaaatgctccaaaatagtgctgccatcctttgag 17392696  T
Q  384 aaagtgtggcagataaagaatgtaacaatg 413  Q
    |||| ||||||||||||||||| |||||||    
T  17392697 aaagcgtggcagataaagaatgcaacaatg 17392726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 435
Target Start/End: Complemental strand, 12354716 - 12354541
Alignment:
Q  260 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 359  Q
    ||||| |||||| |||||||||||||||| || || ||| |||||||||| || || | ||||||||||||||| | ||||||||| || ||||| ||||    
T  12354716 tgccattcgtcagtcaaggaccgcgctctatcgacaactgttgcacaagtctccgtaatgtcttcccacaccttgatgttcctatgctttcaaaggctcc 12354617  T
Q  360 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 435  Q
    |||| ||||  ||||||||||| || || ||  || ||||||| |||||||| |||||||| ||||||||||||||    
T  12354616 aaaaaattgccgccagccgttgggagagcgtaacatataaagattgtaacaaagcaaaaatggcctcaatggccga 12354541  T

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Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 260 - 435
Target Start/End: Original strand, 20528977 - 20529152
Alignment:
Q  260 tgccagtcgtcaatcaaggaccgcgctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactcc 359  Q
    ||||| || |||| ||| ||||| |||||||| |||||| |||||||||||||| | || ||||||||||||||||  |||||||| || |||||||  |    
T  20528977 tgccaatcttcaaccaaagaccgagctctttcaaccactgttgcacaagtttctttaacatcttcccacacctttatattcctatgctttcaaagacatc 20529076  T
Q  360 aaaatattgaagccagccgttgagaaagtgtggcagataaagaatgtaacaatgcaaaaattgcctcaatggccga 435  Q
    ||||  ||| ||||| ||||||||| ||||||||||||| ||| |||| ||| ||||| || |||||||| |||||    
T  20529077 aaaaacttgcagccaaccgttgagagagtgtggcagatagagactgtagcaaagcaaagatagcctcaatagccga 20529152  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 405
Target Start/End: Complemental strand, 42079995 - 42079874
Alignment:
Q  284 gctctttccaccactattgcacaagtttctgtgacgtcttcccacacctttaagttcctatgattccaaagactccaaaatattgaagccagccgttgag 383  Q
    |||||||| |||||  |||||||||||| |||   |||||||||||| || |  |||||||| ||||||| ||||||||| |||| ||||| || || ||    
T  42079995 gctctttcaaccaccgttgcacaagtttatgttttgtcttcccacactttgacattcctatgcttccaaatactccaaaaaattgtagccatcctttaag 42079896  T
Q  384 aaagtgtggcagataaagaatg 405  Q
    ||||||||| ||||||||||||    
T  42079895 aaagtgtggtagataaagaatg 42079874  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10600773 - 10600730
Alignment:
Q  1 catgctcgggaggctgccaccgcggctggacagcagctggaaca 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  10600773 catgctcgggaggctgccaccgcggctgggcagcagctggaaca 10600730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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