View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15098_low_2 (Length: 395)
Name: NF15098_low_2
Description: NF15098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15098_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 5524783 - 5525162
Alignment:
| Q |
16 |
attctatatcaatcaaacaccattttccttcttcttaatcatctaacactcttccttaattttctctcttttttctacaaaaccaaagtttctcttcaat |
115 |
Q |
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| T |
5524783 |
attctatatcaatcaaacaccattttccttcttcttaatcatctaacactcttccttaattttctctcttttttctacaaaaccaaagtttctcttcaat |
5524882 |
T |
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| Q |
116 |
ctaatttagtactctctcatttccattcatacatatattnnnnnnntgacaaacaataccaccatccaccctcaagccaaaaccaccaccaacggcggtg |
215 |
Q |
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| T |
5524883 |
ctaatttagtactctctcatttccattcatacatatattaaaaaaatgacaaacaataccaccatccaccctcaagccaaaaccaccaccaacggtggtg |
5524982 |
T |
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| Q |
216 |
cagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggtgcaacccggccaacctaccgtccacaaacccaccgttaccgtaacaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
5524983 |
cagccaccgccgttaaaccctcattcccggcgacaaaagcgcaaatctacggcgccacccgcccaacctaccgtccacaaacccaccgtcaccgtaacaa |
5525082 |
T |
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| Q |
316 |
ccgtaactggtgttgcaccatttgttgctggcttcttctcatcctcatcttcatcctcatcctcctcggcgtcgctggca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5525083 |
ccgtaactggtgttgcaccatttgttgctggcttcttctcatcctcatcttcgtcctcatcctcctcggcgtcgctggca |
5525162 |
T |
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