View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15098_low_3 (Length: 390)

Name: NF15098_low_3
Description: NF15098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15098_low_3
NF15098_low_3
[»] chr4 (5 HSPs)
chr4 (113-374)||(48523903-48524166)
chr4 (8-112)||(48523766-48523870)
chr4 (241-299)||(32430570-32430628)
chr4 (241-279)||(44307844-44307882)
chr4 (139-175)||(39280338-39280374)
[»] chr7 (1 HSPs)
chr7 (255-299)||(37701325-37701369)
[»] chr2 (2 HSPs)
chr2 (241-299)||(4983972-4984030)
chr2 (241-278)||(41838129-41838166)
[»] chr3 (4 HSPs)
chr3 (239-299)||(31070687-31070747)
chr3 (247-280)||(13884331-13884364)
chr3 (139-176)||(39358000-39358037)
chr3 (247-275)||(41716751-41716779)
[»] chr1 (1 HSPs)
chr1 (241-284)||(8258932-8258975)
[»] chr6 (1 HSPs)
chr6 (241-291)||(22476126-22476176)
[»] chr5 (3 HSPs)
chr5 (246-299)||(6706343-6706395)
chr5 (247-299)||(30511811-30511862)
chr5 (247-299)||(30552151-30552202)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 113 - 374
Target Start/End: Original strand, 48523903 - 48524166
Alignment:
Q  113 ggaaaaattgttgtttgtaggaaatgttttgatttttatgtggatgttgagtattataaacttcaaaccttttgcaactcatgtaagattaagagtgctg 212  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||    
T  48523903 ggaaaaattgttgtttgtaggaaatgttttaatttttatgtggatgttgagtattataaacttccaaccttttgtaactcatgtaagattaagagtgatg 48524002  T
Q  213 cttttttcacatcaagtgtttcatagaaac--atgaaaatgactaaaaaattcaacggtagttaactactgttgattttttagttataactagttttggt 310  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  48524003 cttttttcacatcaagtgtttcatagaaacatatgaaaatgaccaaaaaactcaacggtagttaactactgtcgattttttagttataattagttttggt 48524102  T
Q  311 cattttcgcgtgttttctaggaaacaatgaatttgagaaaaacaattctctaaaattaatgaac 374  Q
    |||||||| ||||||| || ||||||||||||||||||||||||||||||||| ||||||||||    
T  48524103 cattttcgtgtgttttttaagaaacaatgaatttgagaaaaacaattctctaagattaatgaac 48524166  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 48523766 - 48523870
Alignment:
Q  8 atattggcaaccaaaaatattgtttaaaattcaagggttctagacactcctttaactctcatgagaaaattaggaagagaactttttgtcattttgacag 107  Q
    |||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  48523766 atattggcaaccaaaaatattgtttaaaattgcagggttctgggcactcctttaactctcatgagaaaaataggaagagaacttttggtcattttgacag 48523865  T
Q  108 agttc 112  Q
    |||||    
T  48523866 agttc 48523870  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 32430628 - 32430570
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    ||||||||| ||||||||| |||| |||||||||||||| |  |||||| |||||||||    
T  32430628 acatgaaaaagactaaaaagttcagcggtagttaactaccgccgattttctagttataa 32430570  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 44307844 - 44307882
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaactac 279  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  44307844 acatggaaatgaccaaaaaattcaacggtagttaactac 44307882  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 39280374 - 39280338
Alignment:
Q  139 ttttgatttttatgtggatgttgagtattataaactt 175  Q
    |||||||||||||||||||||||||||| | ||||||    
T  39280374 ttttgatttttatgtggatgttgagtatgagaaactt 39280338  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 37701369 - 37701325
Alignment:
Q  255 aaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    ||||||||||||||||||||||||| || ||||||||||||||||    
T  37701369 aaaaaattcaacggtagttaactaccgtcgattttttagttataa 37701325  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 4983972 - 4984030
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    ||||| |||||||| ||||||||| |||||||||||||| || |||||| |||||||||    
T  4983972 acatgtaaatgacttaaaaattcagcggtagttaactaccgtcgattttctagttataa 4984030  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 41838129 - 41838166
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaacta 278  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  41838129 acatgtaaatgactaaaaaattcagcggtagttaacta 41838166  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 31070747 - 31070687
Alignment:
Q  239 aaacatgaaaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    |||||||||||||| ||||||||||| |||||||||| ||| ||  ||||| |||||||||    
T  31070747 aaacatgaaaatgattaaaaaattcagcggtagttaattaccgtcaattttctagttataa 31070687  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 13884331 - 13884364
Alignment:
Q  247 aaatgactaaaaaattcaacggtagttaactact 280  Q
    ||||| ||||||||||||||||||||||||||||    
T  13884331 aaatggctaaaaaattcaacggtagttaactact 13884364  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 39358000 - 39358037
Alignment:
Q  139 ttttgatttttatgtggatgttgagtattataaacttc 176  Q
    |||||||||||||||||||||||||||| | |||||||    
T  39358000 ttttgatttttatgtggatgttgagtatgagaaacttc 39358037  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 275
Target Start/End: Complemental strand, 41716779 - 41716751
Alignment:
Q  247 aaatgactaaaaaattcaacggtagttaa 275  Q
    |||||||||||||||||||||||||||||    
T  41716779 aaatgactaaaaaattcaacggtagttaa 41716751  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 8258932 - 8258975
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaactactgttg 284  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  8258932 acatgaaaatgactaaaaaactcagcggtagttaactattgttg 8258975  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 22476176 - 22476126
Alignment:
Q  241 acatgaaaatgactaaaaaattcaacggtagttaactactgttgatttttt 291  Q
    ||||| ||||||| |||||||||| |||||||||||||| || ||||||||    
T  22476176 acatggaaatgaccaaaaaattcagcggtagttaactaccgtcgatttttt 22476126  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 6706395 - 6706343
Alignment:
Q  246 aaaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    |||||||| |||||| ||||||||||||||||||||   |||||||||||||||    
T  6706395 aaaatgac-aaaaaactcaacggtagttaactactgccaattttttagttataa 6706343  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 30511811 - 30511862
Alignment:
Q  247 aaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    ||||||||||||||||||||  ||||||||| |||| |||||| |||||||||    
T  30511811 aaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataa 30511862  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 30552151 - 30552202
Alignment:
Q  247 aaatgactaaaaaattcaacggtagttaactactgttgattttttagttataa 299  Q
    ||||||||||||||||||||  ||||||||| |||| |||||| |||||||||    
T  30552151 aaatgactaaaaaattcaac-atagttaactgctgtcgattttctagttataa 30552202  T

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