View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15098_low_8 (Length: 228)
Name: NF15098_low_8
Description: NF15098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15098_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 24852181 - 24852400
Alignment:
| Q |
9 |
agtgtgttggctaagatcaaagaagcaggactactattagtagaaccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaa |
108 |
Q |
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| T |
24852181 |
agtgtgttggctaagatcaaagaagcagtactactattagtagagccagtaggaaactaaagcttgaaaggcttgaacttgtataggcaatctaaaccaa |
24852280 |
T |
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| Q |
109 |
ctgcaccttcaaggagcacttgattagatgcctgggatttaataaaacacttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagt |
208 |
Q |
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| T |
24852281 |
ctgcaccttcaaggagcacttgattagatgcctgggatttaataaaacacttctgagcatgaagttcaaacaaaacattatcgtcatgagcaaatttagt |
24852380 |
T |
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| Q |
209 |
aactgacatgagattatata |
228 |
Q |
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|||||||||||||||||||| |
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| T |
24852381 |
aactgacatgagattatata |
24852400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 24839872 - 24839938
Alignment:
| Q |
72 |
ttgaaaggcttgaacttgtataggcaatctaaaccaactgcaccttcaaggagcacttgattagatg |
138 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
24839872 |
ttgaaaggcttgaacttgtataggccatctaaaccaactgcaccttcaaggagcacctgattagatg |
24839938 |
T |
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