View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15099_high_1 (Length: 511)
Name: NF15099_high_1
Description: NF15099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15099_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 41265441 - 41265100
Alignment:
| Q |
60 |
gacacatcttttcataggtaataaatcaaatcaattcataggtaaaatagtttcaatttcctctcatacatttatcnnnnnnnaagtactatactattta |
159 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41265441 |
gacacatcttttcataggtaataaatcaa-----ttcataggtaaaatagtttcaatttcctctcatacatttatctttttttaagtactatactattta |
41265347 |
T |
|
| Q |
160 |
aattctaaggtaaaactagagtttgtgactgata-ttttttctttcaagaa----atttagtggctggaatttgagatgaataattaacaaagccaataa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41265346 |
aattctaaggtaaaactagagtttgtgactaatatttttttctttcaagaagtttgtttagtggctggaatttgagatgaataattaacaaagccaataa |
41265247 |
T |
|
| Q |
255 |
cttaccctactgagagaagactt-nnnnnnnntataaaagctacaaaacatatatacagaagaaacaatgaagtcaatactcaaatacctaacattaacg |
353 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
41265246 |
cttaccctactgagagaagacttaaaaaaaaatataaaagctgcaaaacatatatacaggagaaacaatgaagtcgatactcaaatatccaacattaacg |
41265147 |
T |
|
| Q |
354 |
aacttggtatggaaaatataataaatagtaataaacaaatgaatgatg |
401 |
Q |
| |
|
|||||||||||| ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
41265146 |
aacttggtatgggaaataaaat-aatagtaataaataaatgaatgatg |
41265100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 493
Target Start/End: Complemental strand, 41265090 - 41265043
Alignment:
| Q |
446 |
tcgttcgttgtataatttatctacaactattttgcatatgtaagcttt |
493 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41265090 |
tcgttcgttttataatttatctacaactatcttgcatatgtaagcttt |
41265043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 41265470 - 41265442
Alignment:
| Q |
12 |
agcaaaggtgagataaacagtctatactt |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41265470 |
agcaaaggtgagataaacagtctatactt |
41265442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 28622934 - 28622903
Alignment:
| Q |
317 |
aacaatgaagtcaatactcaaatacctaacat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28622934 |
aacaatgaagtcaatactcaaatacctaacat |
28622903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University