View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15099_high_2 (Length: 395)
Name: NF15099_high_2
Description: NF15099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15099_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 32787270 - 32786886
Alignment:
| Q |
11 |
caaaggttagtcatagaatgttggtttcaactcaacaagtagccatgacattatttcaccaagttgttccttcacaaacacttcaaattcaactcaatcc |
110 |
Q |
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| T |
32787270 |
caaaggttagtcatagaatgttggtttcaactcaacaagtagccatgacattatttcaccaagttgttccttcacaaacacttcaaattcaactcaatcc |
32787171 |
T |
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| Q |
111 |
aatgatgccaaacaatccaaactctaaagagaatgtagatgcaattatgatgataatggagaatcaaggatctttctttaggaagttcaaggcctatgtg |
210 |
Q |
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| T |
32787170 |
aatgatgccaaacaatccaaactctaaagagaatgtagatgcaattatgatgataatggagaatcaaggatctttctttaggaagttcaaggcctatgtg |
32787071 |
T |
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| Q |
211 |
atggggaagtggaacttattcaatccatcaaagaaaatagcaagtttggttgtatttgtatttgcacttcttgtgatgcatcgtgtttatttggaggaag |
310 |
Q |
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| T |
32787070 |
atggggaagtggaacttattcaatccatcaaaggaaatagcaagtttggttgtatttgtatttgcacttcttgtgatgcatcgtgtttatttggaggaag |
32786971 |
T |
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| Q |
311 |
aagtggaaatatgcaaaccaaacccaaaaaatgtgaaagagaaaagaatgagagaatcacatgagagattcaaatggaatgaatc |
395 |
Q |
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| T |
32786970 |
aagtggaaatatgcaaaccaaacccaaaaaatgtgaaagagaaaagaatgagagaatcacaagagagagtcaaatggaatgaatc |
32786886 |
T |
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