View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15099_low_3 (Length: 203)
Name: NF15099_low_3
Description: NF15099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15099_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 24850456 - 24850282
Alignment:
| Q |
15 |
gaaaagaaatgtagcattaaagtgagactctcccgaacatagctagtatctttaccttcctagcctttacattttgtttttccatctattattactaaag |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850456 |
gaaaagaaatgtagtattaaagtgagactctcccgaacatagctagtatctttaccttcctagcctttacattttgtttttccatctattattactaaag |
24850357 |
T |
|
| Q |
115 |
catgagtgtaacaaagataaaagcaacaacatggtgtctgtaaaagtgattctaaagttatgaaaagagaaaggt |
189 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |||||| |
|
|
| T |
24850356 |
catgcgtgtaacaaagataaaagcaccaacatggtgtctgtaaaagtgattctaaagttaaggaaagaaaaaggt |
24850282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University