View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509R-Insertion-1 (Length: 973)
Name: NF1509R-Insertion-1
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-1 |
 | |
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| [»] scaffold0311 (3 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 421 - 876
Target Start/End: Original strand, 7165388 - 7165853
Alignment:
| Q |
421 |
gataacatgaattaatgaatagatcgcacaatatgtcagaccccctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7165388 |
gataacatgaattaatgaatagatcgcacaatatgtcagaccctctcttaacgtcttatctaataacataaggatcttttatttgatgatcaatttctca |
7165487 |
T |
|
| Q |
521 |
tcagaaaaaattaatgagtaaatttgtgttacgttcattgttaaatctctctagacggaaactattaaggtttttagcatttagtggcttaattagaaat |
620 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
7165488 |
tcaggaaaaattaatgagtaaatttgtgttacgttcatggttaaatctctctaggcggaaactattaagatttttagcatttagtggcttaattagaatt |
7165587 |
T |
|
| Q |
621 |
agttaatagttagttac---------aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt |
711 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165588 |
agttaatagttagttagtggagtttgaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttt |
7165687 |
T |
|
| Q |
712 |
aatcaaaatatttctcttgataatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaa-tactcaacaaaaaccatac |
810 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
7165688 |
gatcaaaatatttctcttgttaatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaattactcaacaaaaatcatac |
7165787 |
T |
|
| Q |
811 |
aatatcaatcttgaaatgtgtgtaagaggtagaggtcattggaaacttgctcttatgaaatacaca |
876 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
7165788 |
aatatcaatcttgaaatgtgtgtaagaggtggaggtcattggaaacttgctcttatgaaatacaca |
7165853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 7164949 - 7165361
Alignment:
| Q |
9 |
cccttaaaatcgatgaattaacaaacattcaaataatagaaccgtaaataacaaacttacattctcattacacttttaagggatggatgtaaaattaaca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7164949 |
cccttaaaatcgatgaattaacaaacattcaaataatagaaccgtaaataacaaacttacattctcattacacttttaagggatggatgtaaaattaaca |
7165048 |
T |
|
| Q |
109 |
aatgtaattttgctttgtcaatgacggcagaaatggtttgctttcgtgtttctcaatttcactaagttgagttgtttttgcttcaacaataattttatgt |
208 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
7165049 |
catgtatttttgctttgtcaatgacggcataaatggtttgctttcgtgtttctcaatttcactaagttgagttgtttttgcttcaacaataatttcatgt |
7165148 |
T |
|
| Q |
209 |
accagtatgtgggaagataaatatttgatcttgtctcttagaaaacacaaccaatgtttaccatttacgatctcattttttacttaaggg-gtttctcaa |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
7165149 |
accattatgtgggaagataaatatttgatcttgtctcttataaaacacaaccaatgtttaccatttaccatctcattttttacttaagggagtttctcaa |
7165248 |
T |
|
| Q |
308 |
tacctcaccttctatgccaatctataggtcttctcctagtgatttaataccttcaaaggaccactccctgcaactgcaagcacatcattacaaccttgaa |
407 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7165249 |
tacctctccttctatgccaatctataggtcttctcctagtgatttaacaccttcaaaggaccactccctgcaactgcaagcacatcattacaaccttgaa |
7165348 |
T |
|
| Q |
408 |
attctcatctata |
420 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7165349 |
attctcatctata |
7165361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 638 - 790
Target Start/End: Complemental strand, 31822369 - 31822218
Alignment:
| Q |
638 |
aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctct-tgataatc |
736 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| ||| |||| || |
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|
| T |
31822369 |
aagttagttacacaattggttagtctgattagtcctataaatatggacaagtatgtactcattttctatcttttgatcaaaatgtttttctatgat-ttc |
31822271 |
T |
|
| Q |
737 |
ttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctca |
790 |
Q |
| |
|
|||||| ||||||| | || ||||||||||| | |||||||||| |||||||| |
|
|
| T |
31822270 |
ttttctcaatcaaaccattatggctcttttggct-ctaattctccaaattctca |
31822218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 109; Significance: 3e-54; HSPs: 3)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 638 - 800
Target Start/End: Original strand, 13462 - 13623
Alignment:
| Q |
638 |
aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctcttgataatct |
737 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
13462 |
aagttagttacacaattggttagtctaattagtcctataaatatggactagtatgtactcattttctatcttttgatcaaaatatttctct--gtaatct |
13559 |
T |
|
| Q |
738 |
tttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaa-tactcaaca |
800 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||| |
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|
| T |
13560 |
tttctcaatcaaagccttttggctctttttgtttctaattctccgaattcgcaattactcaaca |
13623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 685 - 802
Target Start/End: Original strand, 15088 - 15203
Alignment:
| Q |
685 |
ctagtatgtactcattttctatcttttaatcaaaatatttctcttgataatcttttcttaatcaaagccttttggctcttttgtttcctaattctccgaa |
784 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
15088 |
ctagtatgtactcattttctatcttttgatcaaaatatttctct--gtaatctttt-tcaatcaaagccttttggctctttttgtttctaattctccgaa |
15184 |
T |
|
| Q |
785 |
ttctcaa-tactcaacaaa |
802 |
Q |
| |
|
||||||| ||||||||||| |
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|
| T |
15185 |
ttctcaattactcaacaaa |
15203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 647
Target Start/End: Original strand, 15022 - 15075
Alignment:
| Q |
594 |
ttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta |
647 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15022 |
ttaggatttagtgtgttaattagggttagttaatagttagttacaagttagtta |
15075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 638 - 791
Target Start/End: Original strand, 27737832 - 27737984
Alignment:
| Q |
638 |
aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatcttttaatcaaaatatttctct-tgataatc |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||| ||| | |
|
|
| T |
27737832 |
aagttagttacacaattggttagtccaataagtcctataaataaggactagtatgtactcattttctatcttttgatcaaaatgtttttctacgat-tcc |
27737930 |
T |
|
| Q |
737 |
ttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctcaa |
791 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | |||||||||| ||||||||| |
|
|
| T |
27737931 |
ttttctcaatcaaagccttatggctctattggct-ctaattctccaaattctcaa |
27737984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 632 - 712
Target Start/End: Complemental strand, 20985996 - 20985916
Alignment:
| Q |
632 |
agttacaagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattttctatctttta |
712 |
Q |
| |
|
||||| |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20985996 |
agttagaagttagttacacagtttgttagtccattaagtcctataaatatggactagtatgtactcatttgctatctttta |
20985916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 638 - 701
Target Start/End: Original strand, 8915517 - 8915580
Alignment:
| Q |
638 |
aagttagttacacaattggttagtccaataagtcctataaatatggactagtatgtactcattt |
701 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8915517 |
aagttaattaaacaattggttagtccattaagtcctataaataaggactattatgtactcattt |
8915580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 736 - 790
Target Start/End: Original strand, 30372040 - 30372093
Alignment:
| Q |
736 |
cttttcttaatcaaagccttttggctcttttgtttcctaattctccgaattctca |
790 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||| |||||||| |
|
|
| T |
30372040 |
cttttctcaatcaaagccttatggctcttttgtttcc-aattctctaaattctca |
30372093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 638 - 680
Target Start/End: Original strand, 18776813 - 18776855
Alignment:
| Q |
638 |
aagttagttacacaattggttagtccaataagtcctataaata |
680 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18776813 |
aagttagttacacaattggttagtccattaagtcctataaata |
18776855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 609 - 647
Target Start/End: Original strand, 18776764 - 18776802
Alignment:
| Q |
609 |
ttaattagaaatagttaatagttagttacaagttagtta |
647 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
18776764 |
ttaattaggattagttaatagttagttacaagttagtta |
18776802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 585 - 647
Target Start/End: Original strand, 36472289 - 36472351
Alignment:
| Q |
585 |
ttaaggtttttagcatttagtggcttaattagaaatagttaatagttagttacaagttagtta |
647 |
Q |
| |
|
||||| || |||| |||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36472289 |
ttaagattcttaggatttagtgtgttaattagagttagttaatagttagttacaagttagtta |
36472351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 720
Target Start/End: Original strand, 36472548 - 36472585
Alignment:
| Q |
683 |
gactagtatgtactcattttctatcttttaatcaaaat |
720 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
36472548 |
gactagtatgtactcattttccatcttttgatcaaaat |
36472585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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