View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-11 (Length: 395)

Name: NF1509R-Insertion-11
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-11
NF1509R-Insertion-11
[»] chr5 (7 HSPs)
chr5 (13-395)||(11859071-11859453)
chr5 (84-389)||(12037875-12038168)
chr5 (261-353)||(11826945-11827037)
chr5 (232-330)||(11903281-11903379)
chr5 (71-154)||(11827171-11827257)
chr5 (261-330)||(11730826-11730895)
chr5 (261-330)||(11730382-11730451)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 11859453 - 11859071
Alignment:
Q  13 gttggcaacatggttgcttcgtgttgttgtaacaagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatca 112  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| || ||||||| |  |||||||||||||||||||| |||||||    
T  11859453 gttggcaacatggctgcttcgtgttgttgtaacaagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatca 11859354  T
Q  113 tcattcttaatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaa 212  Q
     |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| || || |||||||||| | |||||||||||||||||||||||    
T  11859353 ccattctcaatctcaattcgcaaatcatctataacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaa 11859254  T
Q  213 attggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaat 312  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11859253 attggtgatgaagaccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaat 11859154  T
Q  313 tccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctcct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11859153 tccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctcct 11859071  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 84 - 389
Target Start/End: Complemental strand, 12038168 - 12037875
Alignment:
Q  84 ttaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatctataacaagtaagatgcgtttctcatgatcagactgatc 180  Q
    |||||||||||||||||||||  |||| ||||  ||   ||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||   |    
T  12038168 ttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatctataacaagtaagaggcgtttctcatgatgagact---c 12038072  T
Q  181 agtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgcttggaaaccagaactccctttgacttgctcatcttca 280  Q
     | ||||| |||| |||| ||||||||||||||  |||           ||||||||||||| ||| || ||| || ||  || |||||||||||| |||    
T  12038071 ggcaacactttttgctatagattcaacatcaaa--ggtt----------ttgatccaaattggttgtaacccaaaattcatttcgacttgctcatcctca 12037984  T
Q  281 caaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcagtatcaaccttgttcatcttcagcagtt 380  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||   || ||||  |||| |||||    
T  12037983 caaacgagatgagcaagttttgttttgccaattccaggaacaccaacaataacaataacaacaggaacagcagcatcagtgttcttcaggttcaccagtt 12037884  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 353
Target Start/End: Complemental strand, 11827037 - 11826945
Alignment:
Q  261 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagcag 353  Q
    ||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||||    
T  11827037 ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcag 11826945  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 11903281 - 11903379
Alignment:
Q  232 gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 330  Q
    ||||||||||| || ||||||| ||    |||||||||| |||||||| ||||| ||||  |||||||||||||| |||||||||||||||||||||||    
T  11903281 gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaat 11903379  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 11827257 - 11827171
Alignment:
Q  71 ccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatctataacaagtaag 154  Q
    |||||| ||||||| ||||||||||| ||||||| ||| ||||||   || |||||| |||||| |||||||||||||| |||||||    
T  11827257 ccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatctataataagtaag 11827171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
Q  261 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 330  Q
    |||||||||||||||| || ||||| || || ||||||||||| || || ||||| ||||||||||||||    
T  11730895 ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat 11730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
Q  261 ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat 330  Q
    |||||||||||||||| |  ||||| ||||| ||||||||||| || || ||||| | ||||||||||||    
T  11730451 ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat 11730382  T

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