View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509R-Insertion-12 (Length: 385)
Name: NF1509R-Insertion-12
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 5230975 - 5231343
Alignment:
| Q |
9 |
gctatttgtaggagattcacttcaaagaaaccaatgggaatcatttgtttgtttggttcaaggtattataccggaaaagaagaagtcaatgaaaagaggg |
108 |
Q |
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| T |
5230975 |
gctatttgtaggagattcacttcaaagaaaccaatgggaatcatttgtttgtttggttcaaggtattataccggaaaaggagaagtcaatgaaacgaggg |
5231074 |
T |
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| Q |
109 |
cgcgttcgttcggtcttcaaagccaaggtaattggaatttagcttccatgtagtagaaaatagtcacactgtcgtagctatgcaattcaggctttctgat |
208 |
Q |
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| T |
5231075 |
cgcgttcgttcggtcttcaaagccaaggtaattcgaatttagcttccatgtagtagaaaatagtcacattgtcgtagtcatgcaattcagactttttgat |
5231174 |
T |
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| Q |
209 |
cgaaattggacggcccgtattcaatcttggaatatgagctgttcaatcttgatcagataacttataatgcatgactataacagctacatttacaatacaa |
308 |
Q |
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| T |
5231175 |
cgaaattggacggcccgtattcaatcttggaatatgagttgttcaatcttgatcagataacttataatgcatgactatgacaactacatttacaatacga |
5231274 |
T |
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| Q |
309 |
gccttttgattcatatcaaatggctcgaattgcatggctatgacaatctagcctttctatactgcaggcaatccgga |
385 |
Q |
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| T |
5231275 |
gccttttgattcatatcaaatggctcgaattgcatggcta--------tagcctttctatactgcaggcaatccgga |
5231343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 25338611 - 25338739
Alignment:
| Q |
10 |
ctatttgtaggagattcacttcaaagaaaccaatgggaatcatttgtttgtttggttcaaggtattataccggaaaagaagaagtcaatgaaaagagggc |
109 |
Q |
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| T |
25338611 |
ctatttgtaggggattcacttcaaagaaatcaatgggaatcttttgtatgtttggtagaatggatcatacctcaaaatcagaaatctatgaaaagagggg |
25338710 |
T |
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| Q |
110 |
gcgttcgttcggtcttcaaagccaaggta |
138 |
Q |
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| T |
25338711 |
ttgttcattcagtcttcgaagtcaaggta |
25338739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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