View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509R-Insertion-13 (Length: 380)
Name: NF1509R-Insertion-13
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-13 |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 3307397 - 3307768
Alignment:
| Q |
9 |
agttcaaggaaataggacaccacaaaaggaatgtgatagaaactgattctgaatcggattaattttcacaatgcgaacactttattaacgacaattctgg |
108 |
Q |
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| T |
3307397 |
agttcaaggaaataggacaccacaaaaggaatgtgatagaaactgattctgaatcggagtaattttcacaatgcgaacactttattaacgacaattctgg |
3307496 |
T |
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| Q |
109 |
tagggttgttcacaacaagattgcatacacacacaatacaaaaggaatgcgatagaaactgattctgaaccgtggtaatttgcacaatacgaacacttta |
208 |
Q |
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| T |
3307497 |
tagggttgttcacaacaagattgcatacacacacaatacaaaaggaatgcgatagaaactgattctgaaccgtggtaatttgcacaatacgaacacttta |
3307596 |
T |
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| Q |
209 |
ttaatgacaattctggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacacatacacaccaa |
308 |
Q |
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| T |
3307597 |
ttaatgacaattctggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacacatacacaccaa |
3307696 |
T |
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| Q |
309 |
gattcaagagcttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccc |
380 |
Q |
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| T |
3307697 |
gattcgagagcttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccc |
3307768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 380
Target Start/End: Original strand, 3300855 - 3301079
Alignment:
| Q |
171 |
ttctgaaccgtggtaatttgcacaatacgaacactttattaatgacaattctggcagaataattcaaaaccaggttgcat--acacaatacaataatgac |
268 |
Q |
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| T |
3300855 |
ttctaaaccgtggtaatttgcacaatacgaacactttattaatgacaattctggctgaataactcacaaccagattgcatacacacagtgcaataatgac |
3300954 |
T |
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| Q |
269 |
ataacgtttacaaataattacaagaacacatacacaccaagattcaagag-------------cttcccaaatgttcgagagttggatctctcccactga |
355 |
Q |
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| T |
3300955 |
agaaagttcaaaaaatattacaagaaaacagacacacaaagattcgagagctcggcctctccccttctcaaatgttcgagagctggatctctcccactaa |
3301054 |
T |
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| Q |
356 |
ccactcaataacttcgagataaccc |
380 |
Q |
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| T |
3301055 |
ccactcgataacttcccgataaccc |
3301079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 3300868 - 3300941
Alignment:
| Q |
68 |
taattttcacaatgcgaacactttattaacgacaattctggtagggttgttcacaacaagattgcatacacaca |
141 |
Q |
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| T |
3300868 |
taatttgcacaatacgaacactttattaatgacaattctggctgaataactcacaaccagattgcatacacaca |
3300941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 18999536 - 18999586
Alignment:
| Q |
320 |
ttcccaaatgttcgagagttggatctctcccactgaccactcaataacttc |
370 |
Q |
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| T |
18999536 |
ttcccaaatgttcgagagttgggtctctcccaataaccactcaataacttc |
18999586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 10878408 - 10878351
Alignment:
| Q |
323 |
ccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccc |
380 |
Q |
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| T |
10878408 |
ccaaatgtttgagagttgggtctctcccaataaccactcaataacttccagacaaccc |
10878351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 12611 - 12661
Alignment:
| Q |
320 |
ttcccaaatgttcgagagttggatctctcccactgaccactcaataacttc |
370 |
Q |
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| T |
12611 |
ttcccaaatgctcgagagttgggtctctcccaataaacactcaataacttc |
12661 |
T |
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