View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-17 (Length: 290)

Name: NF1509R-Insertion-17
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-17
NF1509R-Insertion-17
[»] chr4 (4 HSPs)
chr4 (104-290)||(9769596-9769784)
chr4 (40-92)||(22296753-22296805)
chr4 (41-87)||(13208525-13208571)
chr4 (44-88)||(12215520-12215564)
[»] chr6 (1 HSPs)
chr6 (41-90)||(13248446-13248495)
[»] chr5 (1 HSPs)
chr5 (46-88)||(40028759-40028800)
[»] chr1 (1 HSPs)
chr1 (38-88)||(15182773-15182823)
[»] chr3 (1 HSPs)
chr3 (36-88)||(32198699-32198751)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 9769596 - 9769784
Alignment:
Q  104 ttgaaaataacgtaagatgaccaacaatcaaatgacatgtatcaacaaatgttttcggcttcaacttttcataactcattgcagttactaaaaaatgtt- 202  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  9769596 ttgaaaataacgtaagatgactaacaatcaaataacatgcatcaataaatgttttctgcttcaacttttcataactcattgcagttactaaaaaatgttt 9769695  T
Q  203 -gtcttctagactcgtaaacttgtaagagcctgttaggaaataattctgtctattgattttgttctatttgttttcttatagcttgtta 290  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9769696 tgtcttctagactcgtaaacttgtaagagcctgttaggaaataattctatctattgattttgttctctttgttttcttatagcttgtta 9769784  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 22296805 - 22296753
Alignment:
Q  40 caacttctctaaaactcctttttattgattcaaatcattactaaaatgactgg 92  Q
    ||||||||||||||||||| |||||| | |||| ||| |||||||||||||||    
T  22296805 caacttctctaaaactcctctttattaactcaagtcactactaaaatgactgg 22296753  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 13208571 - 13208525
Alignment:
Q  41 aacttctctaaaactcctttttattgattcaaatcattactaaaatg 87  Q
    ||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  13208571 aacttctctaaaattcctctttattgactcaaatcactactaaaatg 13208525  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 12215564 - 12215520
Alignment:
Q  44 ttctctaaaactcctttttattgattcaaatcattactaaaatga 88  Q
    ||||||||||||||| |||||||| |||||||  |||||||||||    
T  12215564 ttctctaaaactcctctttattgactcaaatctatactaaaatga 12215520  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 13248495 - 13248446
Alignment:
Q  41 aacttctctaaaactcctttttattgattcaaatcattactaaaatgact 90  Q
    |||||||||||||||||| ||||||| ||||||||| || ||||||||||    
T  13248495 aacttctctaaaactcctatttattggttcaaatcaataataaaatgact 13248446  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 40028759 - 40028800
Alignment:
Q  46 ctctaaaactcctttttattgattcaaatcattactaaaatga 88  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  40028759 ctctaaaactcatttt-attgattcaaatcattactaaaatga 40028800  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 15182823 - 15182773
Alignment:
Q  38 aacaacttctctaaaactcctttttattgattcaaatcattactaaaatga 88  Q
    ||||||||||||||||||||| |||||||| |||||| |||  ||||||||    
T  15182823 aacaacttctctaaaactcctatttattgactcaaatgattgataaaatga 15182773  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 32198699 - 32198751
Alignment:
Q  36 tgaacaacttctctaaaactcctttttattgattcaaatcattactaaaatga 88  Q
    ||||||||||||||||||||| ||| |||||| | ||||||  ||||||||||    
T  32198699 tgaacaacttctctaaaactcttttgtattgacttaaatcaccactaaaatga 32198751  T

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