View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1509R-Insertion-18 (Length: 268)
Name: NF1509R-Insertion-18
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 25244226 - 25243966
Alignment:
| Q |
9 |
ataaccatcttttggcggttcgaaccgggtttgaccttcatgaactgataaccaccggtccggtttaaattccatgcaatcttcaccccatacactcttc |
108 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25244226 |
ataaccatcttttggtggttcaaaccgggtttgaccttcatgaaccgataaccaccggtccggtttaaattccatgcaatcttcaccccatacactcttc |
25244127 |
T |
|
| Q |
109 |
attcttccaactgaatatatcgaatatgtcactgttgaacccgccggaaccaccgttccgtctggtaaaacatcgtcgtcgaccgcatatttgaaatcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25244126 |
attcttccaactgaatatatcgaatatgtcaccgttgaacccgccggaaccaccgttccgtctggtaaaacatcgtcgtcgaccgcatatttgaaatcct |
25244027 |
T |
|
| Q |
209 |
ccggcaccgaaggatatagtcttagtgtctcag-ccaatgcagcttttagataaacaagct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25244026 |
ccggcaccgaaggatatagtcttagtgtctcagcccaatgcagcttttagataaacaagct |
25243966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 29669342 - 29669224
Alignment:
| Q |
67 |
tccggtttaaattccatgcaatcttcaccccatacactcttcattcttccaactgaatatatcgaatatgtcactgttgaacccgccggaaccaccgttc |
166 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||| ||| || ||||| ||||| || |||||||| || ||||||||||| |||| |||||||| |
|
|
| T |
29669342 |
tccggtttaaattccaagcaatcttccccccatattttctccatcctcccaacagaataaatggaatatgtaacagttgaacccgctggaatcaccgttc |
29669243 |
T |
|
| Q |
167 |
cgtctggtaaaacatcgtc |
185 |
Q |
| |
|
| || || ||||||||||| |
|
|
| T |
29669242 |
catcggggaaaacatcgtc |
29669224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 263
Target Start/End: Original strand, 41065188 - 41065346
Alignment:
| Q |
105 |
cttcattcttccaactgaatatatcgaatatgtcactgttgaacccgccggaaccaccgttccgtctggtaaaacatcgtcgtcgaccgcatatttgaaa |
204 |
Q |
| |
|
|||||| || ||||| || || |||||||||||||| | ||||| |||||||| | ||||||| ||||||||||||||| | ||| ||| || || |
|
|
| T |
41065188 |
cttcatcctcccaaccgagtaaatcgaatatgtcaccatagaaccagccggaacaaatgttccgtttggtaaaacatcgtcattcaccacatgctttgaa |
41065287 |
T |
|
| Q |
205 |
tcctccggcaccgaaggatatagtcttagtgtctcagccaatgcagcttttagataaac |
263 |
Q |
| |
|
|||| |||||| ||||| || |||| || ||||| | ||||||||||||||||||||| |
|
|
| T |
41065288 |
tcctgcggcacggaagggtaaagtcgtaaagtctcggacaatgcagcttttagataaac |
41065346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 263
Target Start/End: Complemental strand, 11315466 - 11315322
Alignment:
| Q |
119 |
ctgaatatatcgaatatgtcactgttgaacccgccggaaccaccgttccgtctggtaaaacatcgtcgtcgaccgcatatttgaaatcctccggcaccga |
218 |
Q |
| |
|
|||||||||||||||||||||| | ||| || |||||||| | ||||| || || || || ||||| | ||| ||| || ||||||| |||||||| |
|
|
| T |
11315466 |
ctgaatatatcgaatatgtcaccgatgatccagccggaacaaaggttccatccggcaacacgtcgtccttcaccacatgctttgaatcctctggcaccga |
11315367 |
T |
|
| Q |
219 |
aggatatagtcttagtgtctcagccaatgcagcttttagataaac |
263 |
Q |
| |
|
||| || || ||||||||||| | ||| |||||||| |||||||| |
|
|
| T |
11315366 |
agggtacagccttagtgtctccgacaaggcagctttaagataaac |
11315322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University