View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-23 (Length: 91)

Name: NF1509R-Insertion-23
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-23
NF1509R-Insertion-23
[»] chr1 (3 HSPs)
chr1 (9-91)||(31127682-31127764)
chr1 (10-89)||(31078366-31078445)
chr1 (10-89)||(31132392-31132471)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 31127764 - 31127682
Alignment:
Q  9 tggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaaccatc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31127764 tggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatc 31127682  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-24
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 31078445 - 31078366
Alignment:
Q  10 ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaacca 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| ||||||||    
T  31078445 ggcccagcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaacca 31078366  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 31132471 - 31132392
Alignment:
Q  10 ggcccagcctgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttggctcaacca 89  Q
    |||||||| ||||||| || |||| |||||||||||||||||| ||||||||| |||||||| ||| || | ||||||||    
T  31132471 ggcccagcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaacca 31132392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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