View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1509R-Insertion-3 (Length: 835)

Name: NF1509R-Insertion-3
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1509R-Insertion-3
NF1509R-Insertion-3
[»] chr1 (1 HSPs)
chr1 (9-832)||(16509304-16510112)


Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 9 - 832
Target Start/End: Original strand, 16509304 - 16510112
Alignment:
Q  9 gtccgcgcccgaactagcaccggcggcggcgctcgtgttcttgcaacgccgccgaatcaaaaccctaactccgacgagtctgatgcatgcaaagcttcga 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16509304 gtccgcgcccgaaccagcaccggcggcggcgctcgtgttcttgcaacgccgccgaatcaaaaccctaactccgacgagtctgatgcatgcaaagcttcga 16509403  T
Q  109 tcatcaaagtcaaagacgaacctcaagaatttgaagatgaggcaaaatctgtcaccgtcgcttttcaacctccggcggcggagacggtggtggagtgtaa 208  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16509404 tcatcaaagtcaaagacgaaccgcgcgaatttgaagatgaggcaaaatctgtcaccgtcgcttttcaacctccggcggcggagacggtggtggagtgtaa 16509503  T
Q  209 gacggaatctgatgaaccacgttcgatgcttgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgatgaaatcaatg 308  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16509504 gacggaatctgatgaacgacgttcgatgcttgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgttgaaatcaatg 16509603  T
Q  309 gaggctgaatcaacggttcaaacgaaggtagaaagttctgatgttgatgtggttttcgagacgcaagaatcggtgaaatcattggatgaagttcctaatc 408  Q
    || |||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  16509604 gaagctgaatcaacgattcaaatgaaggtagaaagttctgatgttgatgtagtttttgagacgcaagaatcggtgaaatcaatggaagaagttcctaatc 16509703  T
Q  409 tcaatgtggtttgcgatacacaagaatcggttatggttgaaccggttaaggttgagccggttaaggttgaaccggttaaggttgaaccagttaaacaacc 508  Q
    |||||||||||||||||||||||||||||||||||| ||||               |||||||||||||||||||||||||||| ||| |||||||||||    
T  16509704 tcaatgtggtttgcgatacacaagaatcggttatggctgaa---------------ccggttaaggttgaaccggttaaggttggaccggttaaacaacc 16509788  T
Q  509 aacattggctgaaccggtttgtgcagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaagggaaagcagctgtgagtgatgaa 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  16509789 aacattggctgaaccggtttgtgcagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaggggaaagaagctgtgagtgatgaa 16509888  T
Q  609 gttagggttttgaaggtggtgaagaaggaggtagttgaggagaagaagattctgattccgaatctcgaggatggtgagtttcctgttgagcctgggtggt 708  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  16509889 gttagggttttgaaggtggtgaagaaggaggtagttgaagagaagaagatccagattccgaatcttgaggatggtgagtttcctgttgagcctgggtggt 16509988  T
Q  709 cattgttgggaaggaagattgagattgctacttctactgctaaaggagtgagaagattggttgataatgagattatttattttgattttccgaatccgca 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16509989 cattgttgggaaggaagattgagattgctacttctactgctaaaggagtgagaagattggtggataatgagattatttattttgattttccgaatccgca 16510088  T
Q  809 tacgtcgtataagtttcaatggat 832  Q
    ||||||||||||||||||||||||    
T  16510089 tacgtcgtataagtttcaatggat 16510112  T

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