View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1509R-Insertion-4 (Length: 799)
Name: NF1509R-Insertion-4
Description: NF1509R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1509R-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 14426919 - 14426694
Alignment:
| Q |
8 |
attgagcaaattttatggcaccgatttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagt |
107 |
Q |
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| T |
14426919 |
attgagcaaattttgtgggaccgatttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagt |
14426820 |
T |
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| Q |
108 |
aacctgaaattggggccttcttcaatgacaatatctcaatttgctgctcctgggactccaactagtgctgctgcctctcaagggccttcatctatgtcct |
207 |
Q |
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| T |
14426819 |
aacctgaaattggggtcttcttcaatgacgatatctcaatttgctgctcctaggactccaactagtgctgctgcctctcaagggccttcatctatgtcct |
14426720 |
T |
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| Q |
208 |
atggtaacaatgagaatattcccttc |
233 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
14426719 |
atggcaacaatgagaatattcccttc |
14426694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 383 - 577
Target Start/End: Complemental strand, 14426444 - 14426251
Alignment:
| Q |
383 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatat |
482 |
Q |
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| T |
14426444 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatgt |
14426345 |
T |
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| Q |
483 |
tagaaatatgtgctctaaaccctcacatcatgtatttcctnnnnnnnnntcacatcaagtttttgttttgggtaactaaatcacatcaagttcat |
577 |
Q |
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| T |
14426344 |
tagaaatatgtgttctaaaccctcacatcatgtttttcct-aaaaaaaatcacatcaagtttttgttttgggtaactgaatcacatcaagttcat |
14426251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 642 - 779
Target Start/End: Complemental strand, 14426224 - 14426087
Alignment:
| Q |
642 |
cttatgttaatgtcaaattcgattgttcgtccacaatcttggaccaatccattcaaatctttagtttaatgtataaaagataactatttaggaatggtag |
741 |
Q |
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| T |
14426224 |
cttatgttaatgtcaaattcgattgttcgtccacaatcttgcaccaatccattcaaatctttagtttaatgtataaaagataattatttaggaatgttag |
14426125 |
T |
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| Q |
742 |
tttcaaatcaatttggtaggtttctaacttcatttcaa |
779 |
Q |
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| T |
14426124 |
tttcaaatcaatttggtaggtttctaacttcatttcaa |
14426087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 14416841 - 14416647
Alignment:
| Q |
32 |
tttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttca |
131 |
Q |
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| T |
14416841 |
tttatgactttttaagaatcattttcaggtcaaagtggcttgttttactttggatgacaaaaatggtagctcgagtaacctgaatttggggccttcttca |
14416742 |
T |
|
| Q |
132 |
atgacaatatctcaatttgctgctcctgggactccaactagtgctgctgcctctcaagggccttcatctatgtcctatggtaacaatgagaatattcc |
229 |
Q |
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| T |
14416741 |
ataccaatatcccaatttgctgcttttgggactccaactag---tgctaccactcaaggtccttcatctatctcccttagcaacaatgagaacattcc |
14416647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 14426596 - 14426494
Alignment:
| Q |
230 |
cttctaggctcatcagtgtagaagtgggttatttgcatggtgattgttcgatgttctggctggaggtggaattctaaaagggtgatttgaataattggga |
329 |
Q |
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| T |
14426596 |
cttctaggctcatcggtgtagaagcaggttatttgcatggtgattgttcgatgttctggctggaggttgaattctaaaagggtgatttgaataattggga |
14426497 |
T |
|
| Q |
330 |
caa |
332 |
Q |
| |
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||| |
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| T |
14426496 |
caa |
14426494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 383 - 503
Target Start/End: Complemental strand, 14416403 - 14416283
Alignment:
| Q |
383 |
ctgctgatttggatttaaaaaccatttataaaacatttcaagcgatggttgcttttgtttaatcatattattgaggttttagatcctcttatgacaatat |
482 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||| |
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| T |
14416403 |
ctgcttatttggatttaaaaatcatttatgaaacatttcaagcaagggttgcttttgtttaataatattatggaggtgttagatccttttatgacaatat |
14416304 |
T |
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| Q |
483 |
tagaaatatgtgctctaaacc |
503 |
Q |
| |
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| |||||||||| || ||||| |
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| T |
14416303 |
tcgaaatatgtgttccaaacc |
14416283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 4867398 - 4867451
Alignment:
| Q |
41 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaa |
94 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |
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| T |
4867398 |
ttttaagaatcatttccaggtcatagtgggtagttttacattggatggcaaaaa |
4867451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 3409833 - 3409698
Alignment:
| Q |
33 |
ttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaa |
132 |
Q |
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||||||||| |||| |||||||| ||||| | |||||||||||||||||||||| || || |||||| | |||| ||||| | |||||||||||| |
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| T |
3409833 |
ttatgacttattaaaaatcatttacaggtcactgtgggtagttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcag |
3409734 |
T |
|
| Q |
133 |
tgacaatatctcaatttgctgctcctgggactccaa |
168 |
Q |
| |
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|| || || ||| |||||||| |||||||||||| |
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| T |
3409733 |
tgccatcgtcccaaattgctgcttctgggactccaa |
3409698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 7159253 - 7159307
Alignment:
| Q |
41 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaat |
95 |
Q |
| |
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||||| ||||||||| ||||| |||||||| || |||||||||||||| |||||| |
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| T |
7159253 |
ttttatgaatcatttacaggtcatagtgggcagctttactttggatggaaaaaat |
7159307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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